RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 CELF3Q5SZQ8 465 aaKnown RBP18.29■□□□□ 0.52
SNX27-202ENST00000368841 HECTD3Q5T447 861 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 EME2A4GXA9 379 aaPredicted RBP18.29■□□□□ 0.52
SNX27-202ENST00000368841 MRPS6P82932 125 aaKnown RBP18.29■□□□□ 0.52
SNX27-202ENST00000368841 NELL1Q92832 810 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 CAVIN3Q969G5 261 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 PMEPA1Q969W9 287 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 ZNF558Q96NG5 402 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 CMTM6Q9NX76 183 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 PDHA2P29803 388 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 ADRM1Q16186 407 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 CEP68Q76N32 757 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 DAW1Q8N136 415 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 QKIQ96PU8 341 aaKnown RBP eCLIP18.29■□□□□ 0.52
SNX27-202ENST00000368841 LGMNQ99538 433 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 C9orf16Q9BUW7 83 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 SNRNP25Q9BV90 132 aaKnown RBP18.29■□□□□ 0.52
SNX27-202ENST00000368841 PRKD2Q9BZL6 878 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 ABHD16BQ9H3Z7 469 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 UBAP1Q9NZ09 502 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 U3KQV3 271 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 OR10H3O60404 316 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 ITPKAP23677 461 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 PAX7P23759 505 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 ITPKBP27987 946 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 AQP1P29972 269 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 CCT3P49368 545 aaKnown RBP18.29■□□□□ 0.52
SNX27-202ENST00000368841 CPSF6Q16630 551 aaKnown RBP eCLIP18.29■□□□□ 0.52
SNX27-202ENST00000368841 FAM187BQ17R55 369 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 SLC45A4Q5BKX6 768 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 ZNF540Q8NDQ6 660 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 SEMA3CQ99985 751 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 NUAK2Q9H093 628 aa18.29■□□□□ 0.52
SNX27-202ENST00000368841 A0A088AWK7 358 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 MDM4O15151 490 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TLL1O43897 1013 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 OR4Q2P0C623 313 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 NPR3P17342 541 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 ZNF10P21506 573 aaPredicted RBP18.28■□□□□ 0.52
SNX27-202ENST00000368841 PARP6Q2NL67 630 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 PTPN20Q4JDL3 420 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 ALLCQ8N6M5 410 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 CCDC189A1A4V9 331 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 HACD1B0YJ81 288 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 OR5F1O95221 314 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TFEBP19484 476 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TAS2R41P59536 307 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TMEM119Q4V9L6 283 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 ZNF563Q8TA94 476 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 SOCS4Q8WXH5 440 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 LINGO1Q96FE5 620 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 KIAA1683Q9H0B3 1180 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 GMPPBQ9Y5P6 360 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TARBP1Q13395 1621 aaKnown RBP18.28■□□□□ 0.52
SNX27-202ENST00000368841 PLOD3O60568 738 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 ALAS2P22557 587 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 NEPROQ6NW34 567 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 SPESP1Q6UW49 350 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 ATG14Q6ZNE5 492 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 ZNF410Q86VK4 478 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 KRT73Q86Y46 540 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 DUSP9Q99956 384 aaKnown RBP18.28■□□□□ 0.52
SNX27-202ENST00000368841 VPS4AQ9UN37 437 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TRIM3O75382 744 aaPredicted RBP18.28■□□□□ 0.52
SNX27-202ENST00000368841 MAGP20916 626 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 USP46P62068 366 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 PPIDQ08752 370 aaKnown RBP18.28■□□□□ 0.52
SNX27-202ENST00000368841 CLN6Q9NWW5 311 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3DA0A087WVF3 549 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3IA0A087WXS9 549 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3EA0A087X179 549 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3KA0A087X1G2 549 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3FA6NER0 549 aaPredicted RBP18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3LB9A6J9 549 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 RBMXL2O75526 392 aaKnown RBP18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3HP0C7X1 549 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3GQ6DHY5 549 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3CQ6IPX1 549 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TBC1D3Q8IZP1 549 aaPredicted RBP18.28■□□□□ 0.52
SNX27-202ENST00000368841 SLC47A1Q96FL8 570 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 PLEKHG4BQ96PX9 1271 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TRAPPC9Q96Q05 1148 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 MCMBPQ9BTE3 642 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TRMT13Q9NUP7 481 aaKnown RBP18.28■□□□□ 0.52
SNX27-202ENST00000368841 COPG2Q9UBF2 871 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 PCID2Q5JVF3 399 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 AMIGO2Q86SJ2 522 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 C10orf107Q8IVU9 208 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 GOLGA2P5Q9HBQ8 144 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 STARD13Q9Y3M8 1113 aa18.28■□□□□ 0.52
SNX27-202ENST00000368841 TAF4O00268 1085 aa18.27■□□□□ 0.52
SNX27-202ENST00000368841 VPS4BO75351 444 aa18.27■□□□□ 0.52
SNX27-202ENST00000368841 TNFAIP8O95379 198 aa18.27■□□□□ 0.52
SNX27-202ENST00000368841 TOP3BO95985 862 aaKnown RBP18.27■□□□□ 0.52
SNX27-202ENST00000368841 WARSP23381 471 aaKnown RBP18.27■□□□□ 0.52
SNX27-202ENST00000368841 MC4RP32245 332 aa18.27■□□□□ 0.52
SNX27-202ENST00000368841 SUZ12Q15022 739 aaKnown RBP18.27■□□□□ 0.52
SNX27-202ENST00000368841 PSRC1Q6PGN9 363 aaPredicted RBP18.27■□□□□ 0.52
SNX27-202ENST00000368841 RBM43Q6ZSC3 357 aaKnown RBP18.27■□□□□ 0.52
SNX27-202ENST00000368841 WNT8BQ93098 351 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms