RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 EBF3Q9H4W6 596 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 SYBUQ9NX95 663 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 AFF4Q9UHB7 1163 aaKnown RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 TRIOO75962 3097 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 TMCC1O94876 653 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 PENKP01210 267 aaPredicted RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 CSH1P0DML2 217 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 CSH2P0DML3 217 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 MBL2P11226 248 aaPredicted RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 TSHRP16473 764 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 SERPINB6P35237 376 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 CHRNA4P43681 627 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 TUFMP49411 452 aaKnown RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 ALDH18A1P54886 795 aaKnown RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 ZXDBP98169 803 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 EIF4EBP2Q13542 120 aaPredicted RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 TMEM240Q5SV17 173 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 ATG16L1Q676U5 607 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 C16orf46Q6P387 395 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 PSTKQ8IV42 348 aaKnown RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 ATP2A3Q93084 1043 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 SLC39A13Q96H72 371 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 OXNAD1Q96HP4 312 aaPredicted RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 NT5MQ9NPB1 228 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 SAR1AQ9NR31 198 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 SMYD2Q9NRG4 433 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 RBM22Q9NW64 420 aaKnown RBP eCLIP10.78□□□□□ -0.68
TPM3-212ENST00000368533 TXNDC16Q9P2K2 825 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 RCOR3Q9P2K3 495 aaPredicted RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 A0A1W2PRU2 124 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 PDLIM1O00151 329 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 GSC2O15499 205 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 MYL4P12829 197 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 PAX3P23760 479 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 GABRR2P28476 465 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 CORO1AP31146 461 aaKnown RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 PDE1BQ01064 536 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 BRMS1LQ5PSV4 323 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 C9orf50Q5SZB4 431 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 RINLQ6ZS11 566 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 PDZD4Q76G19 769 aaPredicted RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 CRLF3Q8IUI8 442 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 ZNF276Q8N554 614 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 OR7D4Q8NG98 312 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 ZNF398Q8TD17 642 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 HAPLN3Q96S86 360 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 CORO1BQ9BR76 489 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 CENPKQ9BS16 269 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 BTBD10Q9BSF8 475 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 NMUR2Q9GZQ4 415 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 NOL6Q9H6R4 1146 aaKnown RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 TRPM5Q9NZQ8 1165 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 INSL5Q9Y5Q6 135 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 HEMK1Q9Y5R4 338 aaPredicted RBP10.78□□□□□ -0.68
TPM3-212ENST00000368533 MYOFQ9NZM1 2061 aa10.78□□□□□ -0.68
TPM3-212ENST00000368533 PTPRSQ13332 1948 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 GREB1Q4ZG55 1949 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 B2RBV5 119 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 SLC4A1P02730 911 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 ETV4P43268 484 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 AQP5P55064 265 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 SLC18A2Q05940 514 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 PPIDQ08752 370 aaKnown RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 SLC10A7Q0GE19 358 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 GALNT2Q10471 571 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 SFSWAPQ12872 951 aaKnown RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 HECTD3Q5T447 861 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 SMYD5Q6GMV2 418 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 MARK2Q7KZI7 788 aaKnown RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 FBXO27Q8NI29 283 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 GSDMBQ8TAX9 411 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 HSPBAP1Q96EW2 488 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 ZNF778Q96MU6 729 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 SLX1AQ9BQ83 275 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 MLPHQ9BV36 600 aaPredicted RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 APOL5Q9BWW9 433 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 OSBPL2Q9H1P3 480 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 CATSPERBQ9H7T0 1116 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 PLAC1Q9HBJ0 212 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 IPO11Q9UI26 975 aaKnown RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 PLLPQ9Y342 182 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 ZFP37Q9Y6Q3 630 aaPredicted RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 HLA-DQB2P05538 268 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 CKMP06732 381 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 PGM1P36871 562 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 BTKQ06187 659 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 VEPH1Q14D04 833 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 TRIP4Q15650 581 aaPredicted RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 SCUBE1Q8IWY4 988 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 RNF168Q8IYW5 571 aaPredicted RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 ATP6V0D2Q8N8Y2 350 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 NCSTNQ92542 709 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 RTP4Q96DX8 246 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 FAM161BQ96MY7 647 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 EBNA1BP2Q99848 306 aaKnown RBP10.77□□□□□ -0.69
TPM3-212ENST00000368533 DNMT3LQ9UJW3 386 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 COMMD3-BMI1R4GMX3 469 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 DNAH14Q0VDD8 3507 aa10.77□□□□□ -0.69
TPM3-212ENST00000368533 PATJQ8NI35 1801 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms