RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PSMA3P25788 255 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 GCAP28676 217 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 SCNN1BP51168 640 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 SMAD4Q13485 552 aaKnown RBP15.07■□□□□ 0
CCDC88C-202ENST00000334448 LAMB3Q13751 1172 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 GEN1Q17RS7 908 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 TTMPQ5BVD1 217 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 SIRPB2Q5JXA9 342 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 TMEM215Q68D42 235 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 PKN3Q6P5Z2 889 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 PARM1Q6UWI2 310 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 NLRP9Q7RTR0 991 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 SRLQ86TD4 932 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 OR2AP1Q8NGE2 309 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 VOPP1Q96AW1 172 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 ARL8AQ96BM9 186 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 TLCD1Q96CP7 247 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 CFAP36Q96G28 342 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 MRGPRX3Q96LB0 322 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 ATP6V1G3Q96LB4 118 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 TUBGCP5Q96RT8 1024 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 STMN4Q9H169 189 aaPredicted RBP15.07■□□□□ 0
CCDC88C-202ENST00000334448 EBF3Q9H4W6 596 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 VPS18Q9P253 973 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 TCAF1Q9Y4C2 921 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 FAM169AQ9Y6X4 670 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 HEATR9A2RTY3 570 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 OTOL1A6NHN0 477 aaPredicted RBP15.06■□□□□ 0
CCDC88C-202ENST00000334448 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.06■□□□□ 0
CCDC88C-202ENST00000334448 WASH3PC4AMC7 463 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 K7ERQ8 282 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 HTRA2O43464 458 aaPredicted RBP15.06■□□□□ 0
CCDC88C-202ENST00000334448 TIMM44O43615 452 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 GJB3O75712 270 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 PRLP01236 227 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 DLDP09622 509 aaKnown RBP15.06■□□□□ 0
CCDC88C-202ENST00000334448 POLR2EP19388 210 aaKnown RBP15.06■□□□□ 0
CCDC88C-202ENST00000334448 IGFBP4P22692 258 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 CTSOP43234 321 aaPredicted RBP15.06■□□□□ 0
CCDC88C-202ENST00000334448 CHRNA4P43681 627 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 CRADDP78560 199 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 RUNX3Q13761 415 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 GRM3Q14832 879 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 ANKRD20A4Q4UJ75 823 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 EMC10Q5UCC4 262 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 GRAMD4Q6IC98 578 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 CASC4Q6P4E1 433 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 C12orf40Q86WS4 652 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 YAF2Q8IY57 180 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 PPHLN1Q8NEY8 458 aaKnown RBP15.06■□□□□ 0
CCDC88C-202ENST00000334448 UHMK1Q8TAS1 419 aaKnown RBP15.06■□□□□ 0
CCDC88C-202ENST00000334448 EPS8L3Q8TE67 593 aaKnown RBP15.06■□□□□ 0
CCDC88C-202ENST00000334448 SLC44A1Q8WWI5 657 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 FGF14Q92915 247 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 IFT43Q96FT9 208 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 ZFYVE19Q96K21 471 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 EXOC2Q96KP1 924 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 C19orf43Q9BQ61 176 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 PLA2G2FQ9BZM2 168 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 TREX1Q9NSU2 369 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 DEC1Q9P2X7 70 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 ZNF180Q9UJW8 692 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 ERVW-1Q9UQF0 538 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 RAI2Q9Y5P3 530 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 RPS6KL1Q9Y6S9 549 aa15.06■□□□□ 0
CCDC88C-202ENST00000334448 MROH6A6NGR9 719 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 RNF40O75150 1001 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 FAM155BO75949 473 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 ATP5BP06576 529 aaKnown RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 OAS2P29728 719 aaKnown RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 SNRPD1P62314 119 aaKnown RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 ACVR1Q04771 509 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 TRAF2Q12933 501 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 PCSK7Q16549 785 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 LONRF1Q17RB8 773 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 DGKKQ5KSL6 1271 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 KIAA0930Q6ICG6 404 aaPredicted RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 ADGRD1Q6QNK2 874 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 MARK2Q7KZI7 788 aaKnown RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 LRRC6Q86X45 466 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.05■□□□□ -0
CCDC88C-202ENST00000334448 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.05■□□□□ -0
CCDC88C-202ENST00000334448 FRS2Q8WU20 508 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 NXPE3Q969Y0 559 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 MYO19Q96H55 970 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 KXD1Q9BQD3 176 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 TRMT61BQ9BVS5 477 aaKnown RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 ADGRE3Q9BY15 652 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 CPEB1Q9BZB8 566 aaKnown RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 UBE2ZQ9H832 354 aaPredicted RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 TRPV5Q9NQA5 729 aa15.05■□□□□ -0
CCDC88C-202ENST00000334448 PIH1D1Q9NWS0 290 aaKnown RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 PSMC3IPQ9P2W1 217 aaPredicted RBP15.05■□□□□ -0
CCDC88C-202ENST00000334448 A0A1W2PQ67 120 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 TTC24A2A3L6 582 aaPredicted RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 GRXCR2A6NFK2 248 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 TRAFD1O14545 582 aaPredicted RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 TRIM24O15164 1050 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 RGS16O15492 202 aaPredicted RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 SIN3BO75182 1162 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms