RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 PABPC1P11940 636 aaKnown RBP7.96□□□□□ -1.13
CIITA-201ENST00000324288 PRR5LQ6MZQ0 368 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 CRTC3Q6UUV7 619 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 TRIT1Q9H3H1 467 aaKnown RBP7.96□□□□□ -1.13
CIITA-201ENST00000324288 NMRAL1Q9HBL8 299 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 SAR1AQ9NR31 198 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 PNPOQ9NVS9 261 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 RAPGEFL1Q9UHV5 662 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 PCDHB12Q9Y5F1 795 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 PCDHA3Q9Y5H8 950 aa7.96□□□□□ -1.13
CIITA-201ENST00000324288 E7ENX8 843 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 PRG2P13727 222 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 GPAT3Q53EU6 434 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SLC45A4Q5BKX6 768 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SCAIQ8N9R8 606 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 TRNT1Q96Q11 434 aaKnown RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 LRMDAQ9H2I8 198 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 C15orf38-AP3S2A0A0A6YYH1 394 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SMIM22K7EJ46 135 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SMAD9O15198 467 aaKnown RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 DDX3YO15523 660 aaKnown RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 SUPT20HL2P0C7V6 817 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 LINC00032P0C843 101 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 NDST1P52848 882 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 PHC1P78364 1004 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 PTPAQ15257 358 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 CCNG2Q16589 344 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 RNF43Q68DV7 783 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 PTCHD4Q6ZW05 846 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 ARPINQ7Z6K5 226 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SATL1Q86VE3 508 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 CREG2Q8IUH2 290 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 C12orf56Q8IXR9 622 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 LRRC4BQ9NT99 713 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 KCNK4Q9NYG8 393 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SAMD9LQ8IVG5 1584 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 CLTCL1P53675 1640 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 RAMP2O60895 175 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 CRABP2P29373 138 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 RTP1P59025 263 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 BST1Q10588 318 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 IL18Q14116 193 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 TYSND1Q2T9J0 566 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 FRMD7Q6ZUT3 714 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 TOP1MTQ969P6 601 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 ZC3H10Q96K80 434 aaKnown RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 MAP3K14Q99558 947 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 ANKEF1Q9NU02 776 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SNCAIPQ9Y6H5 919 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 PRDM15P57071 1507 aaPredicted RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 TP53BP1Q12888 1972 aaPredicted RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 VPS4BO75351 444 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SERPINA3P01011 423 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 MYL9P24844 172 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 ARPC4P59998 168 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 CDC42P60953 191 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 MED22Q15528 200 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 RALGPS2Q86X27 583 aaPredicted RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 PALB2Q86YC2 1186 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 ACTRT2Q8TDY3 377 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 CCSER2Q9H7U1 834 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 ZNHIT2Q9UHR6 403 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SSR3Q9UNL2 185 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 NOTOA8MTQ0 251 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 M0R036 132 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 ACSL4O60488 711 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 AQP1P29972 269 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 RPL4P36578 427 aaKnown RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 PTPN11Q06124 597 aaPredicted RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 GIT2Q14161 759 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 HDAC2Q92769 488 aaKnown RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 C18orf25Q96B23 403 aaPredicted RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 FCRL4Q96PJ5 515 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 CLK4Q9HAZ1 481 aaKnown RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 CAPN8A6NHC0 703 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 PRR5-ARHGAP8B1AHC4 643 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SNX3O60493 162 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 TOP3BO95985 862 aaKnown RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 STXBP1P61764 594 aaKnown RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 ARHGAP8P85298 464 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SREBF2Q12772 1141 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 TSGA10IPQ3SY00 556 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 CLIP4Q8N3C7 705 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SLC2A14Q8TDB8 520 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 SYT15Q9BQS2 421 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 MIR1-1HGQ9H1L0 117 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 FZD1Q9UP38 647 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 GSTK1Q9Y2Q3 226 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 RAD54BQ9Y620 910 aa7.96□□□□□ -1.14
CIITA-201ENST00000324288 GPC6Q9Y625 555 aaPredicted RBP7.96□□□□□ -1.14
CIITA-201ENST00000324288 H3BM21 787 aa7.95□□□□□ -1.14
CIITA-201ENST00000324288 PEX11AO75192 247 aa7.95□□□□□ -1.14
CIITA-201ENST00000324288 TCF4P15884 667 aa7.95□□□□□ -1.14
CIITA-201ENST00000324288 IFNGR2P38484 337 aa7.95□□□□□ -1.14
CIITA-201ENST00000324288 SLC7A2P52569 658 aa7.95□□□□□ -1.14
CIITA-201ENST00000324288 SYT12Q8IV01 421 aa7.95□□□□□ -1.14
CIITA-201ENST00000324288 NEK7Q8TDX7 302 aa7.95□□□□□ -1.14
CIITA-201ENST00000324288 SPOCK2Q92563 424 aa7.95□□□□□ -1.14
CIITA-201ENST00000324288 FRMD8Q9BZ67 464 aaPredicted RBP7.95□□□□□ -1.14
CIITA-201ENST00000324288 S100A14Q9HCY8 104 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms