RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FBXO47Q5MNV8 452 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 CCSAPQ6IQ19 270 aaPredicted RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 FAM47BQ8NA70 645 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 SMARCD1Q96GM5 515 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 SERPINB11Q96P15 392 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 MUC13Q9H3R2 512 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 NR2F1P10589 423 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 DRD4P21917 467 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 RPL9P32969 192 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 SREBF1P36956 1147 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 PRKG2Q13237 762 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF613Q6PF04 617 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 BTBD9Q96Q07 612 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 RBM4BQ9BQ04 359 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 RBM4Q9BWF3 364 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 DDX3XO00571 662 aaKnown RBP eCLIP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 SUV39H1O43463 412 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 NAGLUP54802 743 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 GCNT1Q02742 428 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 C16orf46Q6P387 395 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 FAM92BQ6ZTR7 304 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 FRMD7Q6ZUT3 714 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 CDYL2Q8N8U2 506 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 MINDY2Q8NBR6 621 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF606Q8WXB4 792 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 C1QTNF7Q9BXJ2 289 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 KCND1Q9NSA2 647 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 GIN1Q9NXP7 522 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 FAM50BQ9Y247 325 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 PMF1-BGLAPU3KQ54 211 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 GLI2P10070 1586 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 AP5Z1O43299 807 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 ZMPSTE24O75844 475 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 FADS2O95864 444 aaKnown RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 FAM86B2P0C5J1 330 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF806P0C7X5 589 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 PPIBP23284 216 aaKnown RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 PCID2Q5JVF3 399 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 SLC41A1Q8IVJ1 513 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 SENP6Q9GZR1 1112 aaPredicted RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 SAMD4AQ9UPU9 718 aaKnown RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 MMP13P45452 471 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 TFAP2DQ7Z6R9 452 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 C12orf56Q8IXR9 622 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 ADCY4Q8NFM4 1077 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 TNFAIP8L1Q8WVP5 186 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 HDAC3O15379 428 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 NFKB1P19838 968 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 S100A2P29034 98 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 PDHA2P29803 388 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 SETMARQ53H47 684 aaPredicted RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 LLGL2Q6P1M3 1020 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 TXNDC11Q6PKC3 985 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 USP45Q70EL2 814 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 PSTKQ8IV42 348 aaKnown RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 HOPXQ9BPY8 73 aaPredicted RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 OGNP20774 298 aaKnown RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 SV2AQ7L0J3 742 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF248Q8NDW4 579 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 CIPCQ9C0C6 399 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 OVOS2A0A0J9YW53 1432 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 OVOS2Q6IE36 1432 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 RGS10O43665 173 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 ULK1O75385 1050 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 CYP4B1P13584 511 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 CLK3P49761 638 aaKnown RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 ACTR3P61158 418 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 PPP2R2BQ00005 443 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 FSCN1Q16658 493 aaKnown RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 PEX5LQ8IYB4 626 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 PARP8Q8N3A8 854 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 NAT14Q8WUY8 206 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 PIK3R3Q92569 461 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 POLR1EQ9GZS1 481 aaKnown RBP13.96□□□□□ -0.17
CSPG4-201ENST00000308508 EXD2Q9NVH0 621 aa13.96□□□□□ -0.17
CSPG4-201ENST00000308508 CNTNAP2Q9UHC6 1331 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 RBMXL2O75526 392 aaKnown RBP13.96□□□□□ -0.18
CSPG4-201ENST00000308508 SHBGP04278 402 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 CLCN5P51795 746 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 TAS2R41P59536 307 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 PPIL2Q13356 520 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 EIF2S3LQ2VIR3 472 aaKnown RBP13.96□□□□□ -0.18
CSPG4-201ENST00000308508 OR8H3Q8N146 312 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 GPRC5AQ8NFJ5 357 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 CERS2Q96G23 380 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 OXCT2Q9BYC2 517 aaPredicted RBP13.96□□□□□ -0.18
CSPG4-201ENST00000308508 RHOBTB2Q9BYZ6 727 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 UPB1Q9UBR1 384 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 NUP50Q9UKX7 468 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 TMEM94Q12767 1356 aa13.96□□□□□ -0.18
CSPG4-201ENST00000308508 A0A0G2JPF8 293 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 HNRNPCL3B7ZW38 293 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 DDX3YO15523 660 aaKnown RBP13.95□□□□□ -0.18
CSPG4-201ENST00000308508 SNX4O95219 450 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 PAEPP09466 180 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 HNRNPCL4P0DMR1 293 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 SLC9A4Q6AI14 798 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 NEPROQ6NW34 567 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 EZH1Q92800 747 aaPredicted RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms