RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 TRPC4Q9UBN4 977 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 EGFL7Q9UHF1 273 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 NR2E1Q9Y466 385 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 MSX2P35548 267 aaPredicted RBP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 CNPY1Q3B7I2 92 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 VSTM1Q6UX27 236 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 ATG14Q6ZNE5 492 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 BANPQ8N9N5 519 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 LEMD2Q8NC56 503 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 C10orf82Q8WW14 230 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 GINS4Q9BRT9 223 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 MUC13Q9H3R2 512 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 ABCC13Q9NSE7 274 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 KLQ9UEF7 1012 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 MAPRE3Q9UPY8 281 aa12.95□□□□□ -0.34
COL3A1-201ENST00000304636 TMA7Q9Y2S6 64 aaKnown RBP12.95□□□□□ -0.34
COL3A1-201ENST00000304636 CCL15-CCL14A0A0B4J2E2 113 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 H3BMM5 538 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 OR56A5P0C7T3 313 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ADSLP30566 484 aaPredicted RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 CCL15Q16663 113 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 DRICH1Q6PGQ1 229 aaPredicted RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 SLCO6A1Q86UG4 719 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 PROX1Q92786 737 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 HPS1Q92902 700 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 TRAF6Q9Y4K3 522 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 SF3B1O75533 1304 aaKnown RBP eCLIP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 NPR3P17342 541 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 PAICSP22234 425 aaKnown RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 IFNGR2P38484 337 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 TNFSF9P41273 254 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 NUMBP49757 651 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 SPIDRQ14159 915 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ZNF280DQ6N043 979 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 GCNT7Q6ZNI0 430 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 GK5Q6ZS86 529 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 CUZD1Q86UP6 607 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 SATL1Q86VE3 508 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ZNF513Q8N8E2 541 aaPredicted RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 REXO5Q96IC2 774 aaKnown RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 EBF3Q9H4W6 596 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 CLN6Q9NWW5 311 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 FBXO5Q9UKT4 447 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 BTRCQ9Y297 605 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 G3V2T6 193 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 MAFO75444 373 aaPredicted RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 C2P06681 752 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 FGFR1P11362 822 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ZNF37AP17032 561 aaPredicted RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 PTPN1P18031 435 aaKnown RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 S100A1P23297 94 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 EGFLAMQ63HQ2 1017 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 C11orf88Q6PI97 169 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 POTEHQ6S545 545 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 KIAA0408Q6ZU52 694 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 CDK20Q8IZL9 346 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 OFCC1Q8IZS5 231 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 CACTIN-AS1Q8N1I8 211 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 PPP1R14BQ96C90 147 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 OSBPL10Q9BXB5 764 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 RHOBTB2Q9BYZ6 727 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 CAB39LQ9H9S4 337 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 MST1RQ04912 1400 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 BCLAF3A2AJT9 711 aaKnown RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 RTN3O95197 1032 aaPredicted RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 FEN1P39748 380 aaKnown RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 GSTM5P46439 218 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 POLD2P49005 469 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ACSM2AQ08AH3 577 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 PPP1R15BQ5SWA1 713 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ACSM2BQ68CK6 577 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 RETSATQ6NUM9 610 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ERAP2Q6P179 960 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 LLGL2Q6P1M3 1020 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 GPRIN3Q6ZVF9 776 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 NEK10Q6ZWH5 1172 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 HASPINQ8TF76 798 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 MED8Q96G25 268 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 Q96MT0 163 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 C12orf65Q9H3J6 166 aaKnown RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 TAS2R1Q9NYW7 299 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ZNF624Q9P2J8 865 aaPredicted RBP12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ATP6V1HQ9UI12 483 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 WASF2Q9Y6W5 498 aa12.94□□□□□ -0.34
COL3A1-201ENST00000304636 ATP6AP2A0A1C7CYW4 349 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 ATP6AP2O75787 350 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 CREB1P16220 341 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 FOXN2P32314 431 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 CAPSQ13938 189 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 ACSBG2Q5FVE4 666 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 IKBIPQ70UQ0 350 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 ANKS1BQ7Z6G8 1248 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 P2RY11Q96G91 374 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 TRIM8Q9BZR9 551 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 PCDHB5Q9Y5E4 795 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 SPACA6W5XKT8 324 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 A0A0J9YYE9 177 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 SLC28A1O00337 649 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 MATN2O00339 956 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms