RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 GOLGA8TH3BQL2 631 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 VAPBO95292 243 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 FGF19O95750 216 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 HLA-DPA1P20036 260 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 CDK18Q07002 472 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 CDH18Q13634 790 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 FSCBQ5H9T9 825 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 KIAA0930Q6ICG6 404 aaPredicted RBP14.4□□□□□ -0.1
C9orf3-202ENST00000297979 SPRED2Q7Z698 418 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 CNTN4Q8IWV2 1026 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 CPXM2Q8N436 756 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 CABS1Q96KC9 395 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 SLC46A2Q9BY10 475 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 PITPNM3Q9BZ71 974 aa14.4□□□□□ -0.1
C9orf3-202ENST00000297979 HELZP42694 1942 aaKnown RBP14.4□□□□□ -0.1
C9orf3-202ENST00000297979 WDR91A4D1P6 747 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 TIMM44O43615 452 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 SNX3O60493 162 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 EPOP01588 193 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 CCR2P41597 374 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 ARCN1P48444 511 aaKnown RBP14.39□□□□□ -0.11
C9orf3-202ENST00000297979 EPHA5P54756 1037 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 ARF5P84085 180 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 MSLNQ13421 630 aaPredicted RBP14.39□□□□□ -0.11
C9orf3-202ENST00000297979 BBS7Q8IWZ6 715 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 ANKS4BQ8N8V4 417 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 TDRD5Q8NAT2 981 aaKnown RBP14.39□□□□□ -0.11
C9orf3-202ENST00000297979 ZNF75CPQ92670 426 aaPredicted RBP14.39□□□□□ -0.11
C9orf3-202ENST00000297979 ISL2Q96A47 359 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 LEFTY2O00292 366 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 RFPL2O75678 378 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 ARHGEF15O94989 841 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 FGF1P05230 155 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 RB1P06400 928 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 MYOGP15173 224 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 ARNTP27540 789 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 MZF1P28698 734 aaPredicted RBP14.39□□□□□ -0.11
C9orf3-202ENST00000297979 IRS1P35568 1242 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 SERPINB8P50452 374 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 CYTH1Q15438 398 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 CNGA3Q16281 694 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 TSTD2Q5T7W7 516 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 FSTL4Q6MZW2 842 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 FAM47EQ6ZV65 393 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 DCLK2Q8N568 766 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 SHKBP1Q8TBC3 707 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 ATXN7L3BQ96GX2 97 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 MCMBPQ9BTE3 642 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 VPS28Q9UK41 221 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 ARHGAP26Q9UNA1 814 aa14.39□□□□□ -0.11
C9orf3-202ENST00000297979 GRM6O15303 877 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 TYK2P29597 1187 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 RGRP47804 291 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 SERPINB4P48594 390 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 CAMK1Q14012 370 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 PDE1CQ14123 709 aaPredicted RBP14.38□□□□□ -0.11
C9orf3-202ENST00000297979 ITIH4Q14624 930 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 GPR158Q5T848 1215 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 DDI1Q8WTU0 396 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 ATP2A3Q93084 1043 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 GRAMD1AQ96CP6 724 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 FEM1AQ9BSK4 669 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 NOD2Q9HC29 1040 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 SNX15Q9NRS6 342 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 IGSF5Q9NSI5 407 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 INSIG1O15503 277 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 SNAP91O60641 907 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 GLRA3O75311 464 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 ZMPSTE24O75844 475 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 PAPSS2O95340 614 aaPredicted RBP14.38□□□□□ -0.11
C9orf3-202ENST00000297979 F7P08709 466 aaPredicted RBP14.38□□□□□ -0.11
C9orf3-202ENST00000297979 PTPN2P17706 415 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 CR2P20023 1033 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 CES1P23141 567 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 DDX6P26196 483 aaKnown RBP eCLIP14.38□□□□□ -0.11
C9orf3-202ENST00000297979 HOXA9P31269 272 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 CSKP41240 450 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 MAGEA12P43365 314 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 SF3A3Q12874 501 aaKnown RBP eCLIP14.38□□□□□ -0.113e-7■■■■□ 26.1
C9orf3-202ENST00000297979 UGP2Q16851 508 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 C6orf89Q6UWU4 347 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 SPATA21Q7Z572 469 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 MFN1Q8IWA4 741 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 WFDC5Q8TCV5 224 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 BHMTQ93088 406 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 VPS39Q96JC1 886 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 EXOC2Q96KP1 924 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 FAM167BQ9BTA0 163 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 HTATIP2Q9BUP3 242 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 SCUBE2Q9NQ36 999 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 PHTF1Q9UMS5 762 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 USP15Q9Y4E8 981 aaPredicted RBP14.38□□□□□ -0.11
C9orf3-202ENST00000297979 OR51B4Q9Y5P0 310 aa14.38□□□□□ -0.11
C9orf3-202ENST00000297979 ATXN2Q99700 1313 aaKnown RBP14.38□□□□□ -0.11
C9orf3-202ENST00000297979 SIN3BO75182 1162 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 SCNN1BP51168 640 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 THOC5Q13769 683 aaKnown RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 MPPE1Q53F39 396 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 MPP7Q5T2T1 576 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 CGB2Q6NT52 195 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms