RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 UCHL3P15374 230 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CYP11B2P19099 503 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ATP5F1P24539 256 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TMC7Q7Z402 723 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GAL3ST3Q96A11 431 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 FAM120BQ96EK7 910 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SIK3Q9Y2K2 1263 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SERPINB7O75635 380 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ITGA8P53708 1063 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 NDUFA9Q16795 377 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 RNF19BQ6ZMZ0 732 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CATSPER4Q7RTX7 472 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CBWD2Q8IUF1 395 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 WDSUB1Q8N9V3 476 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CDC26Q8NHZ8 85 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ATG4AQ8WYN0 398 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GMCL1Q96IK5 515 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ZSWIM3Q96MP5 696 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CCDC32Q9BV29 185 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 NPAP1Q9NZP6 1156 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PLEKHG3A1L390 1219 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 YWHAQP27348 245 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ACSL1P33121 698 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 FMO5P49326 533 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 NT5DC1Q5TFE4 455 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SLC22A10Q63ZE4 541 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ASB13Q8WXK3 278 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 C11orf24Q96F05 449 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 HEPHQ9BQS7 1158 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF577Q9BSK1 485 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TLR6Q9Y2C9 796 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 FANCAO15360 1455 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 DOCK4Q8N1I0 1966 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 FAM47E-STBD1D6RA91 191 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PRPF4O43172 522 aaKnown RBP eCLIP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 SORBS3O60504 671 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GSTM1P09488 218 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CHI3L1P36222 383 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 MGAT5Q09328 741 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 EGFLAMQ63HQ2 1017 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CREB3L2Q70SY1 520 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF567Q8N184 647 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF276Q8N554 614 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TAAR8Q969N4 342 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 AP2M1Q96CW1 435 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 MRPL57Q9BQC6 102 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ADGRE3Q9BY15 652 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TAS2R8Q9NYW2 309 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ST14Q9Y5Y6 855 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ABCA2Q9BZC7 2435 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 A0A087X0B3 334 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 RNASEH1O60930 286 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 NPPAP01160 153 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 RRM1P23921 792 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ADH6P28332 368 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 USP46P62068 366 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 HERC6Q8IVU3 1022 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 SPARTQ8N0X7 666 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF540Q8NDQ6 660 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UTP15Q8TED0 518 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 OSBP2Q969R2 916 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 IFT27Q9BW83 186 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TRIM9Q9C026 710 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CDC42EP4Q9H3Q1 356 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 DDX43Q9NXZ2 648 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 NXF1Q9UBU9 619 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 MARCOQ9UEW3 520 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GMPPBQ9Y5P6 360 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 HACD1B0YJ81 288 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 SCAF4O95104 1147 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CRTAMO95727 393 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 M6PRP20645 277 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CD40LGP29965 261 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 IL18Q14116 193 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ANKRD53Q8N9V6 530 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF419Q96HQ0 510 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 EYA1Q99502 592 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 HNRNPABQ99729 332 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TMEM8AQ9HCN3 771 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GDF3Q9NR23 364 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 IFT52Q9Y366 437 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PCDHGB7Q9Y5F8 929 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ADGRF5Q8IZF2 1346 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 SH2B2O14492 632 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 OAZ2O95190 189 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 RPLP0P05388 317 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PTGER2P43116 358 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ARFIP1P53367 373 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 MAZP56270 477 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TPI1P60174 286 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GTF2H3Q13889 308 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 COTL1Q14019 142 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TEAD4Q15561 434 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 AKR1C8PQ5T2L2 129 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 NAPRTQ6XQN6 538 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 MIB1Q86YT6 1006 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF655Q8N720 491 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 THAP6Q8TBB0 222 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CLPTM1LQ96KA5 538 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 SLC30A2Q9BRI3 323 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms