RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZNF557Q8N988 423 aaPredicted RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 LRRN4Q8WUT4 740 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 OSBPL11Q9BXB4 747 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 PDGFDQ9GZP0 370 aaPredicted RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 PNPOQ9NVS9 261 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 SNX6Q9UNH7 406 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 PAPSS1O43252 624 aaPredicted RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 MTA2O94776 668 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 GJB1P08034 283 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 HNRNPLP14866 589 aaKnown RBP eCLIP10.84□□□□□ -0.67
CD44-201ENST00000263398 C4BPBP20851 252 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ATN1P54259 1190 aaPredicted RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 ROR2Q01974 943 aaKnown RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 HSPA14Q0VDF9 509 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ANGPT1Q15389 498 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 TSNQ15631 228 aaKnown RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 PHKG1Q16816 387 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 HECTD3Q5T447 861 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ADGRD1Q6QNK2 874 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 CHMP1BQ7LBR1 199 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 DEFB128Q7Z7B8 93 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 FAM35AQ86V20 835 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 KRT73Q86Y46 540 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 FITM2Q8N6M3 262 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 PLD5Q8N7P1 536 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 SLC4A11Q8NBS3 891 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 MYLPFQ96A32 169 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 CSPG4P5Q96PW8 444 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 DMAC2Q9NW81 257 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 LGALS13Q9UHV8 139 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ZMYND8Q9ULU4 1186 aaPredicted RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 IPPQ9Y573 584 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ABLIM1O14639 778 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 HPGDP15428 266 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 CDK18Q07002 472 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 MAPK11Q15759 364 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 USP39Q53GS9 565 aaKnown RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 PAGE2BQ5JRK9 111 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 BROXQ5VW32 411 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 CXCL17Q6UXB2 119 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 XYLT1Q86Y38 959 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 PQLC1Q8N2U9 271 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 GSTCDQ8NEC7 633 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 PROX1Q92786 737 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 C7orf26Q96N11 449 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 EPB41L4BQ9H329 900 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ARMC7Q9H6L4 198 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 PCDHGC3Q9UN70 934 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 DHRS12A0PJE2 317 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 CILPO75339 1184 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 CST3P01034 146 aaPredicted RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 RPN2P04844 631 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 FGF1P05230 155 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 MYL12AP19105 171 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 BTG3Q14201 252 aaPredicted RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 TEX44Q53QW1 395 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 METTL21CQ5VZV1 264 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 TXNDC11Q6PKC3 985 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 SPESP1Q6UW49 350 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 TSHZ1Q6ZSZ6 1077 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 GPRIN3Q6ZVF9 776 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 C16orf59Q7L2K0 433 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 HEATR4Q86WZ0 1026 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 CDYL2Q8N8U2 506 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 OR52K2Q8NGK3 314 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 MAGEC3Q8TD91 643 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 POP5Q969H6 163 aaKnown RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 HDAC10Q969S8 669 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 TCF12Q99081 682 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 RTKNQ9BST9 563 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 PNPLA3Q9NST1 481 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 ATAD3AQ9NVI7 634 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 PSMD13Q9UNM6 376 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 HBS1LQ9Y450 684 aaKnown RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 AP4B1Q9Y6B7 739 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 IGLV3-22A0A075B6J6 115 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 BCLAF3A2AJT9 711 aaKnown RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 PCDH8O95206 1070 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 COL6A2P12110 1019 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 PAICSP22234 425 aaKnown RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 ADSSP30520 456 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 GRK4P32298 578 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 MAPK10P53779 464 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 ITGA1P56199 1179 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 KLF10Q13118 480 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 DGCR6Q14129 220 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 CYP2A13Q16696 494 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 PDZK1Q5T2W1 519 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 FGD2Q7Z6J4 655 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 EFCAB3Q8N7B9 438 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 ATL1Q8WXF7 558 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 BSNDQ8WZ55 320 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 SYNDIG1Q9H7V2 258 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 RPS6KB2Q9UBS0 482 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 GNPTGQ9UJJ9 305 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 DNMT3LQ9UJW3 386 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 RPS6KA6Q9UK32 745 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 KPNA3O00505 521 aaPredicted RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 DYRK3O43781 588 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 TSPAN8P19075 237 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms