RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TMEM114B3SHH9 223 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 GPR25O00155 361 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 DLGAP1O14490 977 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 SRP72O76094 671 aaKnown RBP14.5□□□□□ -0.09
SDC1-201ENST00000254351 KCNA5P22460 613 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 CXCR3P49682 368 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 CYP51A1Q16850 503 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 STEAP4Q687X5 459 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 MAMDC4Q6UXC1 1216 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 DSG4Q86SJ6 1040 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 SAPCD2Q86UD0 394 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 HM13Q8TCT9 377 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 FAM151AQ8WW52 585 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 ZNF670Q9BS34 389 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 NDEL1Q9GZM8 345 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 EXD2Q9NVH0 621 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 VWA5AO00534 786 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 GABBR2O75899 941 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 JAK1P23458 1154 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 OPRL1P41146 370 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 MAGEA6P43360 314 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 APLP1P51693 650 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 BCAT1P54687 386 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 DHRS4L2Q6PKH6 230 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 CMTR2Q8IYT2 770 aaKnown RBP14.49□□□□□ -0.09
SDC1-201ENST00000254351 RYBPQ8N488 228 aaPredicted RBP14.49□□□□□ -0.09
SDC1-201ENST00000254351 KDM1BQ8NB78 822 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 ING2Q9H160 280 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 DPEP3Q9H4B8 488 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 MTF2Q9Y483 593 aaPredicted RBP14.49□□□□□ -0.09
SDC1-201ENST00000254351 DDHD2O94830 711 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 TCEA1P23193 301 aaKnown RBP14.49□□□□□ -0.09
SDC1-201ENST00000254351 STAT5BP51692 787 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 TUBA4AP68366 448 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 SLC6A3Q01959 620 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 TXNDC5Q8NBS9 432 aaKnown RBP14.49□□□□□ -0.09
SDC1-201ENST00000254351 OR6B3Q8NGW1 331 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 KHSRPQ92945 711 aaKnown RBP eCLIP14.49□□□□□ -0.09
SDC1-201ENST00000254351 GPRASP2Q96D09 838 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 MIR1-1HGQ9H1L0 117 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 LRRC40Q9H9A6 602 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 COL4A5P29400 1685 aa14.49□□□□□ -0.09
SDC1-201ENST00000254351 DHRS12A0PJE2 317 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 PTGES3LE9PB15 166 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 IQCF3P0C7M6 154 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 ZNF12P17014 697 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 BDNFP23560 247 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 IDUAP35475 653 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 PCYT1AP49585 367 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 NSUN2Q08J23 767 aaKnown RBP eCLIP14.48□□□□□ -0.09
SDC1-201ENST00000254351 ZYG11AQ6WRX3 759 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 CTU1Q7Z7A3 348 aaKnown RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 CAMK1DQ8IU85 385 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 TMEM126BQ8IUX1 230 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 ZBTB8OSQ8IWT0 167 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 DDIASQ8IXT1 998 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 PPP1R13LQ8WUF5 828 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 ELMO2Q96JJ3 720 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 GLT1D1Q96MS3 346 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 MRPL45Q9BRJ2 306 aaKnown RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 MARCH7Q9H992 704 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 WDR70Q9NW82 654 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 NCKIPSDQ9NZQ3 722 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 ZCWPW2A0A1B0GU75 182 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 NFKBIEO00221 500 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 PPEF2O14830 753 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 AURKAO14965 403 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 ZBTB24O43167 697 aaPredicted RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 ESRRBO95718 433 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 SLC35E2BP0CK96 405 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 VDRP11473 427 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 IL7RP16871 459 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 STX5Q13190 355 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 LY6KQ17RY6 165 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 CNTD1Q8N815 330 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 OR2T34Q8NGX1 318 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 OR2T3Q8NH03 318 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 CELF6Q96J87 481 aaKnown RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 OSBPL2Q9H1P3 480 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 GBA2Q9HCG7 927 aaPredicted RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 SNX10Q9Y5X0 201 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 SYNCRIPO60506 623 aaKnown RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 PARNO95453 639 aaKnown RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 AHSGP02765 367 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 C8BP07358 591 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 SNRPB2P08579 225 aaKnown RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 STAG3L1P0CL83 205 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 LRP8Q14114 963 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 SF3B4Q15427 424 aaKnown RBP eCLIP14.48□□□□□ -0.09
SDC1-201ENST00000254351 FAM83EQ2M2I3 478 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 PPP4R4Q6NUP7 873 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 NIM1KQ8IY84 436 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 CENPLQ8N0S6 344 aaPredicted RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 SPPL2BQ8TCT7 592 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 HDAC10Q969S8 669 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 SLX1AQ9BQ83 275 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 BEGAINQ9BUH8 593 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 SNX25Q9H3E2 840 aa14.48□□□□□ -0.09
SDC1-201ENST00000254351 IFT80Q9P2H3 777 aaPredicted RBP14.48□□□□□ -0.09
SDC1-201ENST00000254351 SUCOQ9UBS9 1254 aaKnown RBP14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms