RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TRIM67Q6ZTA4 783 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 TTC9BQ8N6N2 239 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 ICA1LQ8NDH6 482 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 OR52K2Q8NGK3 314 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 NMUR1Q9HB89 426 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 ETAA1Q9NY74 926 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 GABRDO14764 452 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 SETSIPP0DME0 302 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 CNTFP26441 200 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 USP46P62068 366 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 LAMB3Q13751 1172 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 MGAT5BQ3V5L5 792 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 BNC2Q6ZN30 1099 aaPredicted RBP10.8□□□□□ -0.68
USP28-201ENST00000003302 SPPL2BQ8TCT7 592 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 PIF1Q9H611 641 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 WDCPQ9H6R7 721 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 NOL11Q9H8H0 719 aaKnown RBP10.8□□□□□ -0.68
USP28-201ENST00000003302 IGSF5Q9NSI5 407 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 UBQLN1Q9UMX0 589 aaKnown RBP10.8□□□□□ -0.68
USP28-201ENST00000003302 CDY2AQ9Y6F7 541 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 CDY1Q9Y6F8 540 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 DLGAP1O14490 977 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 PPARGP37231 505 aaPredicted RBP10.8□□□□□ -0.68
USP28-201ENST00000003302 GALNT2Q10471 571 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.8□□□□□ -0.68
USP28-201ENST00000003302 BTBD8Q5XKL5 378 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 GPR142Q7Z601 462 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 DPP9Q86TI2 863 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 NUP93Q8N1F7 819 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 BRI3BPQ8WY22 251 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 HBEGFQ99075 208 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 NOL6Q9H6R4 1146 aaKnown RBP10.8□□□□□ -0.68
USP28-201ENST00000003302 PLEKHA5Q9HAU0 1116 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 RAP2CQ9Y3L5 183 aa10.8□□□□□ -0.68
USP28-201ENST00000003302 HACD1B0YJ81 288 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 MAFKO60675 156 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 OXTRP30559 389 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 SCNN1BP51168 640 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 INSCQ1MX18 579 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 TBC1D25Q3MII6 688 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 UGT3A2Q3SY77 523 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 CCDC153Q494R4 210 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 SCIMPQ6UWF3 145 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 ZDHHC17Q8IUH5 632 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 CASP10Q92851 521 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 PTERQ96BW5 349 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 ELMO2Q96JJ3 720 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 MRGPRX2Q96LB1 330 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 AGO3Q9H9G7 860 aaKnown RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 V9GYQ6 96 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 SOCS2O14508 198 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 CNTN5O94779 1100 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 NDST2P52849 883 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 DUSP28Q4G0W2 176 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 EZH1Q92800 747 aaPredicted RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 MS4A4AQ96JQ5 239 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 FAM200BP0CF97 657 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 PRDX3P30048 256 aaKnown RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 STT3AP46977 705 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 IREB2P48200 963 aaKnown RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 MAPK10P53779 464 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 ADAM17P78536 824 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 PABPC1LQ4VXU2 614 aaKnown RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 GPR158Q5T848 1215 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 DQX1Q8TE96 717 aaKnown RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 SGCDQ92629 289 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 CCDC97Q96F63 343 aaPredicted RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 PPP1R10Q96QC0 940 aaKnown RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 GCOM2Q9BZD3 368 aaPredicted RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 TSPYL2Q9H2G4 693 aaPredicted RBP10.79□□□□□ -0.68
USP28-201ENST00000003302 RNF181Q9P0P0 153 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 DNAJB4Q9UDY4 337 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 ASB1Q9Y576 335 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 ARHGAP10A1A4S6 786 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 ZNF487B1APH4 448 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 MGEA5O60502 916 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 KPNA6O60684 536 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 ATP6V1B2P21281 511 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 TIAL1Q01085 375 aaKnown RBP eCLIP10.79□□□□□ -0.68
USP28-201ENST00000003302 CDK18Q07002 472 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 SEMA3AQ14563 771 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 KLHDC9Q8NEP7 349 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 B4GALNT2Q8NHY0 566 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 ZFAND2BQ8WV99 257 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 LPGAT1Q92604 370 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 HDAC11Q96DB2 347 aa10.79□□□□□ -0.68
USP28-201ENST00000003302 ZNF236Q9UL36 1845 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 ZNF839A8K0R7 811 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 A8MT66 165 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 TSPAN3O60637 253 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 SLC4A1P02730 911 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 GRB7Q14451 532 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 ANO4Q32M45 955 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 AGKQ53H12 422 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 PELI3Q8N2H9 469 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 OR13J1Q8NGT2 312 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 CANT1Q8WVQ1 401 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 RHOJQ9H4E5 214 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 CACNA2D2Q9NY47 1150 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 TSR3Q9UJK0 312 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms