RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 NT5C1B-RDH14C9J2C7 533 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 AKR7A2O43488 359 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SMAD6O43541 496 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CCR1P32246 355 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 THPOP40225 353 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PSMD4P55036 377 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CAMK2BQ13554 666 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CBFBQ13951 182 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 STAT4Q14765 748 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 FNDC3BQ53EP0 1204 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 NHSL2Q5HYW2 709 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CENPPQ6IPU0 288 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 UBE2J2Q8N2K1 259 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 OR5T3Q8NGG3 340 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CENPIQ92674 756 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 DCUN1D5Q9BTE7 237 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TRIM9Q9C026 710 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PHAXQ9H814 394 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ETNK1Q9HBU6 452 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 INTS13Q9NVM9 706 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 A0A1W2PPW3 197 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 OPN1LWP04000 364 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TYK2P29597 1187 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 HK2P52789 917 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 DDR1Q08345 913 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MGAT5Q09328 741 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SERINC3Q13530 473 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 KPNB1Q14974 876 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PLCL1Q15111 1095 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 KHDRBS2Q5VWX1 349 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 LRRC8EQ6NSJ5 796 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 FAM228AQ86W67 206 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CIR1Q86X95 450 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TERB1Q8NA31 727 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ACTR6Q9GZN1 396 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CNOT10Q9H9A5 744 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CNNM1Q9NRU3 951 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 DNAJC28Q9NX36 388 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CXXC1Q9P0U4 656 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TRPV2Q9Y5S1 764 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CCDC188H7C350 402 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SULT1C2O00338 296 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PMPCBO75439 489 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GCNT3O95395 438 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DARSP14868 501 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PTPN1P18031 435 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 UGT2B15P54855 530 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 NR1H2P55055 460 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SLC3A1Q07837 685 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 KIF26BQ2KJY2 2108 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 KIAA0319Q5VV43 1072 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SHEQ5VZ18 495 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ARMC10Q8N2F6 343 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CBARPQ8N350 705 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CD300LFQ8TDQ1 290 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF384Q8TF68 577 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ADAMTS14Q8WXS8 1223 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SLC7A6OSQ96CW6 309 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CYFIP2Q96F07 1278 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GAD1Q99259 594 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 IFT27Q9BW83 186 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DCTPP1Q9H773 170 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CACNA2D2Q9NY47 1150 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CABP1Q9NZU7 370 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PRR23D1E9PI22 279 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 STX16O14662 325 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FKBP9O95302 570 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 APBB3O95704 486 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 LTFP02788 710 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 UQCRFS1P1P0C7P4 283 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PRR23D2P0DMB1 279 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CEBPDP49716 269 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF157P51786 506 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 MERTKQ12866 999 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 UBE3CQ15386 1083 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 OR6B2Q6IFH4 312 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 MEIOBQ8N635 442 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CELF1Q92879 486 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 BORCS5Q969J3 196 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 EXOC2Q96KP1 924 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 RACGAP1Q9H0H5 632 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 HMG20AQ9NP66 347 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 KCNK9Q9NPC2 374 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TRPC4Q9UBN4 977 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PHF11Q9UIL8 331 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF208O43345 1280 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TGOLN2O43493 480 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FAM13AO94988 1023 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 RAB6AP20340 208 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PPP2R1BP30154 601 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 HERVK_113P63132 956 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 RALGPS1Q5JS13 557 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FKBP9P1Q75LS8 142 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GALNT11Q8NCW6 608 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FAM172AQ8WUF8 416 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZFRQ96KR1 1074 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TRNT1Q96Q11 434 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DCLK3Q9C098 648 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GRIP2Q9C0E4 1043 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms