RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SEMA5AQ13591 1074 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 SPDYE2Q495Y8 402 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 PAGE2BQ5JRK9 111 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 STYK1Q6J9G0 422 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 TMEM214Q6NUQ4 689 aaKnown RBP11.14□□□□□ -0.63
CLN3-244ENST00000636147 NEPROQ6NW34 567 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 LINC00523Q86TU6 105 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 SCN4BQ8IWT1 228 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 FBXO16Q8IX29 292 aaPredicted RBP11.14□□□□□ -0.63
CLN3-244ENST00000636147 COPS5Q92905 334 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 FAM162AQ96A26 154 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 QKIQ96PU8 341 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLN3-244ENST00000636147 RBM22Q9NW64 420 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLN3-244ENST00000636147 PLK2Q9NYY3 685 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 SFMBT1Q9UHJ3 866 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 PIN4Q9Y237 131 aaKnown RBP11.14□□□□□ -0.63
CLN3-244ENST00000636147 MTF2Q9Y483 593 aaPredicted RBP11.14□□□□□ -0.63
CLN3-244ENST00000636147 MAGEB16A2A368 324 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.14□□□□□ -0.63
CLN3-244ENST00000636147 WNT10BO00744 389 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 HTRA2O43464 458 aaPredicted RBP11.14□□□□□ -0.63
CLN3-244ENST00000636147 HOXC6P09630 235 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 HGFP14210 728 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 EPHX2P34913 555 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 PPP1R8Q12972 351 aaKnown RBP11.14□□□□□ -0.63
CLN3-244ENST00000636147 PFKFB4Q16877 469 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 MAP1SQ66K74 1059 aaPredicted RBP11.14□□□□□ -0.63
CLN3-244ENST00000636147 B3GNT9Q6UX72 402 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 LDB1Q86U70 411 aaPredicted RBP11.14□□□□□ -0.63
CLN3-244ENST00000636147 CUZD1Q86UP6 607 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 CENPSQ8N2Z9 138 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 PSMA8Q8TAA3 256 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 HTRA1Q92743 480 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 TBCDQ9BTW9 1192 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 IL22Q9GZX6 179 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 ZNF696Q9H7X3 374 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 SETD4Q9NVD3 440 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 TRAF6Q9Y4K3 522 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 IRS2Q9Y4H2 1338 aa11.14□□□□□ -0.63
CLN3-244ENST00000636147 A0A0J9YYE9 177 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 MTSS1O43312 755 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 HS6ST1O60243 411 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 APOA1P02647 267 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 RBP1P09455 135 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 MTHFD1P11586 935 aaKnown RBP11.13□□□□□ -0.63
CLN3-244ENST00000636147 MLNP12872 115 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 INSRRP14616 1297 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 YWHAQP27348 245 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 NPY2RP49146 381 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 KPNA1P52294 538 aaPredicted RBP11.13□□□□□ -0.63
CLN3-244ENST00000636147 ARHGDIAP52565 204 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 SLC10A2Q12908 348 aaPredicted RBP11.13□□□□□ -0.63
CLN3-244ENST00000636147 PGS1Q32NB8 556 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 ANKDD1AQ495B1 522 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 ZBED5Q49AG3 693 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 FAM91A1Q658Y4 838 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 RNF19BQ6ZMZ0 732 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 CCDC80Q76M96 950 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 OTOP3Q7RTS5 596 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 PIGZQ86VD9 579 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 TERB1Q8NA31 727 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 SPATA22Q8NHS9 363 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 BLOC1S5Q8TDH9 187 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 ELMO1Q92556 727 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 TAMM41Q96BW9 452 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 CCDC126Q96EE4 140 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 KLHL32Q96NJ5 620 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 SORT1Q99523 831 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 RHOJQ9H4E5 214 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 MYOZ2Q9NPC6 264 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 PCDH12Q9NPG4 1184 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 MRGBPQ9NV56 204 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 TBC1D13Q9NVG8 400 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 OXSMQ9NWU1 459 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 SH3PXD2BA1X283 911 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 K7EPI3 171 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 CLDN5O00501 218 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 CCL22O00626 93 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 HBP1O60381 514 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 L1CAMP32004 1257 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 HARS2P49590 506 aaKnown RBP11.13□□□□□ -0.63
CLN3-244ENST00000636147 RABGGTBP53611 331 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 BROXQ5VW32 411 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 PGM2L1Q6PCE3 622 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 LCLAT1Q6UWP7 414 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 TMC5Q6UXY8 1006 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 CHSY3Q70JA7 882 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 LILRA2Q8N149 483 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 DQX1Q8TE96 717 aaKnown RBP11.13□□□□□ -0.63
CLN3-244ENST00000636147 TRPC4APQ8TEL6 797 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 ASB9Q96DX5 294 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 NACA2Q9H009 215 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 FBRSL1Q9HCM7 1045 aaKnown RBP11.13□□□□□ -0.63
CLN3-244ENST00000636147 SEMA4BQ9NPR2 832 aaPredicted RBP11.13□□□□□ -0.63
CLN3-244ENST00000636147 STK32BQ9NY57 414 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 KIF17Q9P2E2 1029 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 FBXO5Q9UKT4 447 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 EMCNQ9ULC0 261 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 SPATA31C2B4DYI2 1134 aa11.13□□□□□ -0.63
CLN3-244ENST00000636147 MAFO75444 373 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms