RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TAS2R39P59534 338 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 ZNF460Q14592 562 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 PPP2R5DQ14738 602 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 FSCN1Q16658 493 aaKnown RBP12.91□□□□□ -0.34
LINC00540-203ENST00000631321 LIN52Q52LA3 116 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 TMEM198Q66K66 360 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 TXNDC5Q8NBS9 432 aaKnown RBP12.91□□□□□ -0.34
LINC00540-203ENST00000631321 ICA1LQ8NDH6 482 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 NCSTNQ92542 709 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 PAAF1Q9BRP4 392 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 PRKD2Q9BZL6 878 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 SMOC2Q9H3U7 446 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 TMLHEQ9NVH6 421 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 INPP5FQ9Y2H2 1132 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 DTNAQ9Y4J8 743 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 COPG1Q9Y678 874 aaKnown RBP12.91□□□□□ -0.34
LINC00540-203ENST00000631321 TRPC5OSA6NMA1 111 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 SDHDO14521 159 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 DENRO43583 198 aaKnown RBP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 PAGE1O75459 146 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 IGHA2P01877 340 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 HLA-DQB2P05538 268 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 XRCC1P18887 633 aaPredicted RBP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 FKBP1BP68106 108 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 NRG1Q02297 640 aaPredicted RBP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 CEACAM7Q14002 265 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 PDK3Q15120 406 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 CNGA3Q16281 694 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 MMEL1Q495T6 779 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 TIGD7Q6NT04 549 aaPredicted RBP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 UGT2A3Q6UWM9 527 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 CD300LGQ6UXG3 332 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 TICAM1Q8IUC6 712 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 PELI3Q8N2H9 469 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 DLG3Q92796 817 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 ELMO2Q96JJ3 720 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 MRGPRX2Q96LB1 330 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 CENPKQ9BS16 269 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 SENP6Q9GZR1 1112 aaPredicted RBP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 SIK2Q9H0K1 926 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 EFCAB1Q9HAE3 211 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 IGSF5Q9NSI5 407 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 NCKIPSDQ9NZQ3 722 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 FBXO5Q9UKT4 447 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 NUP205Q92621 2012 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 TCAF2A6NFQ2 919 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 BCAS2O75934 225 aaPredicted RBP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 CCR1P32246 355 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 CLCN2P51788 898 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 FOLH1Q04609 750 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 ADGRE1Q14246 886 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 FLOT2Q14254 428 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 CHSY3Q70JA7 882 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 METTL23Q86XA0 190 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 MARVELD2Q8N4S9 558 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 HEXDCQ8WVB3 486 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 FAR2Q96K12 515 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 FCRL2Q96LA5 508 aaPredicted RBP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 PPP1R36Q96LQ0 422 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 SH3GL3Q99963 347 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 SPATA16Q9BXB7 569 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 TRPV6Q9H1D0 765 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 WDR41Q9HAD4 459 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 ARNT2Q9HBZ2 717 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 ABCC13Q9NSE7 274 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 MRGBPQ9NV56 204 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 RBM22Q9NW64 420 aaKnown RBP eCLIP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 OSER1Q9NX31 292 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 UTP6Q9NYH9 597 aaKnown RBP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 FNIP2Q9P278 1114 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 RIMS3Q9UJD0 308 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 DSEQ9UL01 958 aa12.9□□□□□ -0.34
LINC00540-203ENST00000631321 G3BP2Q9UN86 482 aaKnown RBP12.9□□□□□ -0.34
LINC00540-203ENST00000631321 WASH4PA8MWX3 477 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 M0QZQ0 153 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 PAX3P23760 479 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 DPP6P42658 865 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 PSMD8P48556 350 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 CHN2P52757 468 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 SLC14A2Q15849 920 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 PDCD2Q16342 344 aaPredicted RBP12.89□□□□□ -0.35
LINC00540-203ENST00000631321 CCL14Q16627 93 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 C11orf91Q3C1V1 193 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 GRAMD1BQ3KR37 738 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 NXNQ6DKJ4 435 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 ZNF470Q6ECI4 717 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 NEPROQ6NW34 567 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 FBXL19Q6PCT2 694 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 KDELC1Q6UW63 502 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 TRIM67Q6ZTA4 783 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 LRRTM3Q86VH5 581 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.89□□□□□ -0.35
LINC00540-203ENST00000631321 CCNYL1Q8N7R7 359 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 RTL3Q8N8U3 475 aaKnown RBP12.89□□□□□ -0.35
LINC00540-203ENST00000631321 SCAMP5Q8TAC9 235 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 DCUN1D1Q96GG9 259 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 OMDQ99983 421 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 TBC1D13Q9NVG8 400 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 CPA4Q9UI42 421 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 PACSIN3Q9UKS6 424 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms