RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 SIP14410 1827 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 HMX2A2RU54 273 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 AP2A1O95782 977 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 SOX9P48436 509 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 KDSRQ06136 332 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 MPP3Q13368 585 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 SEMA5AQ13591 1074 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 ITGA9Q13797 1035 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 PPP2R2DQ66LE6 453 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 ITPRIPL1Q6GPH6 555 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 Q6ZVU0 165 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 MARK4Q96L34 752 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 TTC25Q96NG3 672 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 SLC9A7Q96T83 725 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 HBEGFQ99075 208 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 GBA3Q9H227 469 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 TASP1Q9H6P5 420 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 TMEM216Q9P0N5 145 aa10.65□□□□□ -0.7
VPS11-208ENST00000621676 UBA2Q9UBT2 640 aaPredicted RBP10.65□□□□□ -0.7
VPS11-208ENST00000621676 YBX2Q9Y2T7 364 aaKnown RBP10.65□□□□□ -0.7
VPS11-208ENST00000621676 IQANK1A0A1B0GTG1 560 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 FAM237BA0A1B0GVD1 139 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 TMEM189-UBE2V1I3L0A0 370 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 AGRPO00253 132 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 TBC1D4O60343 1298 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 OR1I1O60431 355 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 KIAA0754O94854 1291 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 SNRPAP09012 282 aaKnown RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 SLC2A3P11169 496 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 ATXN3P54252 364 aaPredicted RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 CDH17Q12864 832 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 PEX6Q13608 980 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 GEN1Q17RS7 908 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 PABPC1LQ4VXU2 614 aaKnown RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 AGBL2Q5U5Z8 902 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 EMC10Q5UCC4 262 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 GKAP1Q5VSY0 366 aaPredicted RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 MYLK4Q86YV6 388 aaPredicted RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 EFCAB3Q8N7B9 438 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 ZNF689Q96CS4 500 aaPredicted RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 HDAC11Q96DB2 347 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 PRR11Q96HE9 360 aaPredicted RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 CYLDQ9NQC7 956 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 PTPRZ1P23471 2315 aaPredicted RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 EPOPA6NHQ4 379 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 LEFTY2O00292 366 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 AHSGP02765 367 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 UGT2B4P06133 528 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 ITGA2BP08514 1039 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 FMO4P31512 558 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 PTPN7P35236 360 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 FDFT1P37268 417 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 SLC12A2P55011 1212 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 IL9RQ01113 521 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 USP4Q13107 963 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 PPIGQ13427 754 aaKnown RBP eCLIP10.64□□□□□ -0.71
VPS11-208ENST00000621676 KLHL38Q2WGJ6 581 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 SIRPB2Q5JXA9 342 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 TMEM31Q5JXX7 168 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 ZNF648Q5T619 568 aaPredicted RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 FAM151BQ6UXP7 276 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 PACS1Q6VY07 963 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 NUDCD3Q8IVD9 361 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 CACNA2D3Q8IZS8 1091 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 MRPL43Q8N983 215 aaKnown RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 LMNTD1Q8N9Z9 388 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 ARMC5Q96C12 935 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 LRRC3BQ96PB8 259 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 TMEM237Q96Q45 408 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 RPP25Q9BUL9 199 aaKnown RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 OSBPL2Q9H1P3 480 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 SCUBE2Q9NQ36 999 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 TYW5A2RUC4 315 aaKnown RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 BHMG1C9JSJ3 638 aaPredicted RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 TMCC1O94876 653 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 ABLIM3O94929 683 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 CTSAP10619 480 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 RHOQP17081 205 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 METAP1P53582 386 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 CDH13P55290 713 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 HABP4Q5JVS0 413 aaKnown RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 NAPEPLDQ6IQ20 393 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 FLCNQ8NFG4 579 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 ATXN2LQ8WWM7 1075 aaKnown RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 RMDN2Q96LZ7 410 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 TMEM175Q9BSA9 504 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 CAAP1Q9H8G2 361 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 XAB2Q9HCS7 855 aaKnown RBP10.64□□□□□ -0.71
VPS11-208ENST00000621676 NEU3Q9UQ49 428 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 SPO11Q9Y5K1 396 aa10.64□□□□□ -0.71
VPS11-208ENST00000621676 MYO10Q9HD67 2058 aa10.63□□□□□ -0.71
VPS11-208ENST00000621676 A0A096LPK6 155 aa10.63□□□□□ -0.71
VPS11-208ENST00000621676 LOC100653049A0A140TA62 436 aa10.63□□□□□ -0.71
VPS11-208ENST00000621676 A0A1W2PQ67 120 aa10.63□□□□□ -0.71
VPS11-208ENST00000621676 SH3BGRLO75368 114 aa10.63□□□□□ -0.71
VPS11-208ENST00000621676 KRT34O76011 436 aa10.63□□□□□ -0.71
VPS11-208ENST00000621676 IGLV3-25P01717 112 aa10.63□□□□□ -0.71
VPS11-208ENST00000621676 ALDOAP04075 364 aaKnown RBP10.63□□□□□ -0.71
VPS11-208ENST00000621676 CEBPBP17676 345 aa10.63□□□□□ -0.71
VPS11-208ENST00000621676 RAB33AQ14088 237 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms