RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RTL3Q8N8U3 475 aaKnown RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 SLC30A5Q8TAD4 765 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 WDR48Q8TAF3 677 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 GPT2Q8TD30 523 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 HCAR2Q8TDS4 363 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 FGF11Q92914 225 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 ERGIC2Q96RQ1 377 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 CNPY3Q9BT09 278 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 TM6SF2Q9BZW4 377 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 ABCG4Q9H172 646 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 FZD3Q9NPG1 666 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 DKK3Q9UBP4 350 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 LIMA1Q9UHB6 759 aaKnown RBP12.1□□□□□ -0.47
UPF3B-204ENST00000619445 SIK3Q9Y2K2 1263 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 MFHAS1Q9Y4C4 1052 aa12.1□□□□□ -0.47
UPF3B-204ENST00000619445 FFAR2O15552 330 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 BUB1O43683 1085 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 CD160O95971 181 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 EPHB2P29323 1055 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 RFC1P35251 1148 aaPredicted RBP12.09□□□□□ -0.47
UPF3B-204ENST00000619445 EIF2S3P41091 472 aaKnown RBP12.09□□□□□ -0.47
UPF3B-204ENST00000619445 RPIAP49247 311 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 THOP1P52888 689 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 CLDN2P57739 230 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 SEMG2Q02383 582 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 ELP6Q0PNE2 266 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 PTP4A2Q12974 167 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 STX1AQ16623 288 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 WDR59Q6PJI9 974 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 GDPD4Q6W3E5 623 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 ZNF354CQ86Y25 554 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 MARCH9Q86YJ5 346 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 SLC22A18ASQ8N1D0 253 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 JOSD2Q8TAC2 188 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 VCPIP1Q96JH7 1222 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 BMFQ96LC9 184 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 DCBLD2Q96PD2 775 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 UBL7Q96S82 380 aaPredicted RBP12.09□□□□□ -0.47
UPF3B-204ENST00000619445 CPEB1Q9BZB8 566 aaKnown RBP12.09□□□□□ -0.47
UPF3B-204ENST00000619445 TTYH3Q9C0H2 523 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 LMBRD1Q9NUN5 540 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 SEPT11Q9NVA2 429 aaKnown RBP12.09□□□□□ -0.47
UPF3B-204ENST00000619445 FANCLQ9NW38 375 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 SPASTQ9UBP0 616 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 SALL4Q9UJQ4 1053 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 MYO6Q9UM54 1294 aa12.09□□□□□ -0.47
UPF3B-204ENST00000619445 POM121BA6NF01 834 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 IGLON5A6NGN9 336 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 TMEM110-MUSTN1A8MSY1 372 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 WASH4PA8MWX3 477 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 K7ESM1 405 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 AREL1O15033 823 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 AQP9O43315 295 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 LZTS3O60299 673 aaPredicted RBP12.08□□□□□ -0.48
UPF3B-204ENST00000619445 OPA1O60313 960 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 TM7SF2O76062 418 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 UGT2B4P06133 528 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 FERP16591 822 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 XPAP23025 273 aaPredicted RBP12.08□□□□□ -0.48
UPF3B-204ENST00000619445 BLKP51451 505 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 PFN3P60673 137 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 RHOAP61586 193 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 UBXN1Q04323 297 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 COL9A2Q14055 689 aaPredicted RBP12.08□□□□□ -0.48
UPF3B-204ENST00000619445 PDE1CQ14123 709 aaPredicted RBP12.08□□□□□ -0.48
UPF3B-204ENST00000619445 FZD2Q14332 565 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 TBC1D25Q3MII6 688 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 DCUN1D2Q6PH85 259 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 MON1BQ7L1V2 547 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 TTC7BQ86TV6 843 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 UMODL1-AS1Q8N2C9 162 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 SDR16C5Q8N3Y7 309 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 CCDC185Q8N715 623 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 LSM14AQ8ND56 463 aaKnown RBP12.08□□□□□ -0.48
UPF3B-204ENST00000619445 ZNF548Q8NEK5 533 aaPredicted RBP12.08□□□□□ -0.48
UPF3B-204ENST00000619445 CXorf40AQ8TE69 158 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 NAT6Q93015 286 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 APOLD1Q96LR9 279 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 ZNF578Q96N58 590 aaPredicted RBP12.08□□□□□ -0.48
UPF3B-204ENST00000619445 KLF6Q99612 283 aaPredicted RBP12.08□□□□□ -0.48
UPF3B-204ENST00000619445 IL12RB2Q99665 862 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 NCAPGQ9BPX3 1015 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 NAT10Q9H0A0 1025 aaKnown RBP12.08□□□□□ -0.48
UPF3B-204ENST00000619445 UCKL1Q9NWZ5 548 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 NEU3Q9UQ49 428 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 CELSR3Q9NYQ7 3312 aa12.08□□□□□ -0.48
UPF3B-204ENST00000619445 FAM72CH0Y354 149 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 TK2O00142 265 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 DXOO77932 396 aaKnown RBP12.07□□□□□ -0.48
UPF3B-204ENST00000619445 TMCC1O94876 653 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 GIMD1P0DJR0 217 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 JUNDP17535 347 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 KLK7P49862 253 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 PEX5P50542 639 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 ZNF135P52742 658 aaPredicted RBP12.07□□□□□ -0.48
UPF3B-204ENST00000619445 UCNP55089 124 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 FGL2Q14314 439 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 FAM72AQ5TYM5 149 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 CDCP2Q5VXM1 449 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 FAM72DQ6L9T8 149 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms