RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FSBPO95073 299 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 SEMA4FO95754 770 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 HLA-DQB2P05538 268 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 PTMAP06454 111 aaKnown RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 C5AR1P21730 350 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 CTNNA2P26232 953 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 TFDP3Q5H9I0 405 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 SEL1L3Q68CR1 1132 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 LZTR1Q8N653 840 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 EXD1Q8NHP7 514 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 SNX19Q92543 992 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 FAM131CQ96AQ9 280 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 MYOCQ99972 504 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 CINPQ9BW66 212 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 BTBD1Q9H0C5 482 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 NOD2Q9HC29 1040 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 LCMT1Q9UIC8 334 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 R3HDM2Q9Y2K5 976 aaKnown RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 PCDHGC4Q9Y5F7 938 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 ZSCAN5CA6NGD5 496 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 C16orf96A6NNT2 1141 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 C10orf142B7Z368 130 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 ENC1O14682 589 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 ZBTB24O43167 697 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 ADH1BP00325 375 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 GSRP00390 522 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 CR2P20023 1033 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 SERPINB6P35237 376 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 MPLP40238 635 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 RECQLP46063 649 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 SNRPD1P62314 119 aaKnown RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 DSC2Q02487 901 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 TTC31Q49AM3 519 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 TMCO4Q5TGY1 634 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 ADAT2Q7Z6V5 191 aaKnown RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 KIAA2013Q8IYS2 634 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 FUBP1Q96AE4 644 aaKnown RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 GDAP1L1Q96MZ0 367 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 PSKH2Q96QS6 385 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 IRF2BPLQ9H1B7 796 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 SEMA4AQ9H3S1 761 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 FZD3Q9NPG1 666 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 AMFRQ9UKV5 643 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-202ENST00000616974 BCLAF3A2AJT9 711 aaKnown RBP13.65□□□□□ -0.22
LINC00540-202ENST00000616974 A8MX80 341 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 NDUFS2O75306 463 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 PRLRP16471 622 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 CXCR5P32302 372 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 NIPAL4Q0D2K0 466 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 AP1B1Q10567 949 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 LAIR1Q6GTX8 287 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 LPCAT2Q7L5N7 544 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 ZCCHC9Q8N567 271 aaKnown RBP13.65□□□□□ -0.22
LINC00540-202ENST00000616974 TMIEQ8NEW7 156 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 C1orf216Q8TAB5 229 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 OSBPL8Q9BZF1 889 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 BRD8Q9H0E9 1235 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 MIR1-1HGQ9H1L0 117 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 SEPT10Q9P0V9 454 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 NCDNQ9UBB6 729 aa13.65□□□□□ -0.22
LINC00540-202ENST00000616974 ZFR2Q9UPR6 939 aaKnown RBP13.65□□□□□ -0.22
LINC00540-202ENST00000616974 FANCGO15287 622 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 PLRG1O43660 514 aaKnown RBP13.64□□□□□ -0.23
LINC00540-202ENST00000616974 KRT86O43790 486 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 EPN2O95208 641 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 IGSF6O95976 241 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 JCHAINP01591 159 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 PDHA1P08559 390 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 MMP13P45452 471 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 RWDD2BP57060 319 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ZBTB16Q05516 673 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TRAF2Q12933 501 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 FGL2Q14314 439 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ELF2Q15723 593 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 LYSMD4Q5XG99 296 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 USP30Q70CQ3 517 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 SRLQ86TD4 932 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 RGL4Q8IZJ4 473 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 HDAC11Q96DB2 347 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TLR10Q9BXR5 811 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 MAK16Q9BXY0 300 aaKnown RBP13.64□□□□□ -0.23
LINC00540-202ENST00000616974 FBRSQ9HAH7 460 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ASXL3Q9C0F0 2248 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3DA0A087WVF3 549 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3IA0A087WXS9 549 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3EA0A087X179 549 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3KA0A087X1G2 549 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3FA6NER0 549 aaPredicted RBP13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3LB9A6J9 549 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 H0Y8X5 98 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TRAFD1O14545 582 aaPredicted RBP13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ALOX15BO15296 676 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 POP4O95707 220 aaKnown RBP13.64□□□□□ -0.23
LINC00540-202ENST00000616974 PRNPP04156 253 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3HP0C7X1 549 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ADRB3P13945 408 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 CCNB1P14635 433 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 IRX4P78413 519 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms