RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 EXOC4Q96A65 974 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 ACDQ96AP0 544 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 ZNF419Q96HQ0 510 aaPredicted RBP11.62□□□□□ -0.55
SLIRP-212ENST00000613856 C2orf49Q9BVC5 232 aaPredicted RBP11.62□□□□□ -0.55
SLIRP-212ENST00000613856 FOXP3Q9BZS1 431 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 PHACTR1Q9C0D0 580 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 HPS4Q9NQG7 708 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 RAB6BQ9NRW1 208 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 HAUS2Q9NVX0 235 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 PLK2Q9NYY3 685 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 UBA2Q9UBT2 640 aaPredicted RBP11.62□□□□□ -0.55
SLIRP-212ENST00000613856 VPS28Q9UK41 221 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 CLEC4EQ9ULY5 219 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 HPCAL4Q9UM19 191 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 NFU1Q9UMS0 254 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 ATP8A1Q9Y2Q0 1164 aa11.62□□□□□ -0.55
SLIRP-212ENST00000613856 MRPS17Q9Y2R5 130 aaKnown RBP11.62□□□□□ -0.55
SLIRP-212ENST00000613856 MUC22E2RYF6 1773 aaPredicted RBP11.62□□□□□ -0.55
SLIRP-212ENST00000613856 GIPC1O14908 333 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 AXIN1O15169 862 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ZBTB24O43167 697 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 LRP3O75074 770 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 METTL18O95568 372 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 HLA-DQB2P05538 268 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 PABPC1P11940 636 aaKnown RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ARSAP15289 507 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 PSMB4P28070 264 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 HLA-FP30511 346 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 CD70P32970 193 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 CD68P34810 354 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 HSPA9P38646 679 aaKnown RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 MMP13P45452 471 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 PXNP49023 591 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 CCR3P51677 355 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 PLTPP55058 493 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 BASP1P80723 227 aaKnown RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ARF5P84085 180 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 SHC2P98077 582 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 CDK16Q00536 496 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 CBLBQ13191 982 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 LBRQ14739 615 aaKnown RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 GAB4Q2WGN9 574 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 INO80DQ53TQ3 878 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 MARC1Q5VT66 337 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 TRIM68Q6AZZ1 485 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ALG1LQ6GMV1 187 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 TCEAL6Q6IPX3 200 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 PID1Q7Z2X4 250 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 METTL3Q86U44 580 aaKnown RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ETFBKMTQ8IXQ9 262 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 YAF2Q8IY57 180 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 BBS5Q8N3I7 341 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 CPA6Q8N4T0 437 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 WFIKKN2Q8TEU8 576 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 PRCCQ92733 491 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 TCEAL3Q969E4 200 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 CAVIN3Q969G5 261 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 XPO6Q96QU8 1125 aaKnown RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 FCRL5Q96RD9 977 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 FMO2Q99518 471 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 SPON2Q9BUD6 331 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 TRMT61BQ9BVS5 477 aaKnown RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 CEP41Q9BYV8 373 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 FRMD8Q9BZ67 464 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 TSPYL1Q9H0U9 437 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 NEUROG2Q9H2A3 272 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ARRDC1-AS1Q9H2J1 176 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ECT2Q9H8V3 914 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 GLOD4Q9HC38 313 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 POLR3BQ9NW08 1133 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 RBM22Q9NW64 420 aaKnown RBP eCLIP11.61□□□□□ -0.557e-6■■■□□ 17.4
SLIRP-212ENST00000613856 MTRF1LQ9UGC7 380 aaKnown RBP11.61□□□□□ -0.55
SLIRP-212ENST00000613856 SEPT3Q9UH03 358 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 RSPH14Q9UHP6 348 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 VPS51Q9UID3 782 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ANAPC5Q9UJX4 755 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 GGA2Q9UJY4 613 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ZMIZ1Q9ULJ6 1067 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 SLC27A6Q9Y2P4 619 aa11.61□□□□□ -0.55
SLIRP-212ENST00000613856 ANKRD36A6QL64 1941 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 CEP295Q9C0D2 2601 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 AKAP13Q12802 2813 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 IGF2RP11717 2491 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 ERI2A8K979 691 aaKnown RBP11.6□□□□□ -0.55
SLIRP-212ENST00000613856 CBX4O00257 560 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 TMEM63AO94886 807 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 NFKB1P19838 968 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 GLDCP23378 1020 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 EIF2DP41214 584 aaKnown RBP11.6□□□□□ -0.55
SLIRP-212ENST00000613856 SULT2A1Q06520 285 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 SLC10A7Q0GE19 358 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 NR1H3Q13133 447 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 ZNF235Q14590 738 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 SLC14A2Q15849 920 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 FUT11Q495W5 492 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 AASDHQ4L235 1098 aaPredicted RBP11.6□□□□□ -0.55
SLIRP-212ENST00000613856 PITRM1Q5JRX3 1037 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 RETSATQ6NUM9 610 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 FBXO38Q6PIJ6 1188 aa11.6□□□□□ -0.55
SLIRP-212ENST00000613856 PPP1R21Q6ZMI0 780 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms