RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 NEK5Q6P3R8 708 aa16.42■□□□□ 0.22
LSM4-206ENST00000600289 ERN2Q76MJ5 926 aaKnown RBP16.42■□□□□ 0.22
LSM4-206ENST00000600289 MAP7D3Q8IWC1 876 aa16.42■□□□□ 0.22
LSM4-206ENST00000600289 ZCCHC9Q8N567 271 aaKnown RBP16.42■□□□□ 0.22
LSM4-206ENST00000600289 OR14C36Q8NHC7 312 aa16.42■□□□□ 0.22
LSM4-206ENST00000600289 GRIN3AQ8TCU5 1115 aa16.42■□□□□ 0.22
LSM4-206ENST00000600289 CALR3Q96L12 384 aaKnown RBP16.42■□□□□ 0.22
LSM4-206ENST00000600289 BBC3Q96PG8 261 aaPredicted RBP16.42■□□□□ 0.22
LSM4-206ENST00000600289 CPEB1Q9BZB8 566 aaKnown RBP16.42■□□□□ 0.22
LSM4-206ENST00000600289 ZDHHC5Q9C0B5 715 aa16.42■□□□□ 0.22
LSM4-206ENST00000600289 TMEM9BQ9NQ34 198 aa16.42■□□□□ 0.22
LSM4-206ENST00000600289 ETNK2Q9NVF9 386 aa16.42■□□□□ 0.22
LSM4-206ENST00000600289 PCDHA13Q9Y5I0 950 aa16.42■□□□□ 0.22
LSM4-206ENST00000600289 EPN1Q9Y6I3 576 aaPredicted RBP16.42■□□□□ 0.22
LSM4-206ENST00000600289 TENM4Q6N022 2769 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 SOWAHDA6NJG2 315 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 ARHGAP33O14559 1287 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 CDX4O14627 284 aaPredicted RBP16.41■□□□□ 0.22
LSM4-206ENST00000600289 FSBPO95073 299 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 CFIP05156 583 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 SYPP08247 313 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 CD48P09326 243 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 GRIA4P48058 902 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 DNA2P51530 1060 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 AFF3P51826 1226 aaKnown RBP16.41■□□□□ 0.22
LSM4-206ENST00000600289 NEK3P51956 506 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 RHOAP61586 193 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 GRM3Q14832 879 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 PAFAH1B3Q15102 231 aaKnown RBP16.41■□□□□ 0.22
LSM4-206ENST00000600289 ATP13A4Q4VNC1 1196 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 LEKR1Q6ZMV7 388 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 PDZD3Q86UT5 571 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 ZSCAN30Q86W11 494 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 LRRC49Q8IUZ0 686 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 TMEM139Q8IV31 216 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 ZDHHC6Q9H6R6 413 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 SP110Q9HB58 689 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 IPO11Q9UI26 975 aaKnown RBP16.41■□□□□ 0.22
LSM4-206ENST00000600289 GPSM3Q9Y4H4 160 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 LRRK1Q38SD2 2015 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 GON4LQ3T8J9 2241 aa16.41■□□□□ 0.22
LSM4-206ENST00000600289 ASCC3Q8N3C0 2202 aaKnown RBP16.41■□□□□ 0.22
LSM4-206ENST00000600289 BTNL10A8MVZ5 291 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 DFFAO00273 331 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 PLK4O00444 970 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 AP1G1O43747 822 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 KDELR1P24390 212 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 RACK1P63244 317 aaKnown RBP16.4■□□□□ 0.22
LSM4-206ENST00000600289 RAD51Q06609 339 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 ANKRD20A8PQ5CZ79 823 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 ZNF805Q5CZA5 627 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 NCBP2-AS2Q69YL0 99 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 PARS2Q7L3T8 475 aaKnown RBP16.4■□□□□ 0.22
LSM4-206ENST00000600289 KCTD6Q8NC69 237 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 PCDH19Q8TAB3 1148 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 HCAR2Q8TDS4 363 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 SNX19Q92543 992 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 RAB7BQ96AH8 199 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 PSKH2Q96QS6 385 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 CALN1Q9BXU9 219 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 MIR1-1HGQ9H1L0 117 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 TM9SF3Q9HD45 589 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 DKK3Q9UBP4 350 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 DMTF1Q9Y222 760 aa16.4■□□□□ 0.22
LSM4-206ENST00000600289 TBC1D3DA0A087WVF3 549 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TBC1D3IA0A087WXS9 549 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TBC1D3EA0A087X179 549 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TBC1D3KA0A087X1G2 549 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TSPAN11A1L157 253 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TBC1D3FA6NER0 549 aaPredicted RBP16.39■□□□□ 0.21
LSM4-206ENST00000600289 FAM47DPA6NHR8 397 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TMEM110-MUSTN1A8MSY1 372 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TBC1D3LB9A6J9 549 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 KRIT1O00522 736 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 MAFKO60675 156 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 IPO7O95373 1038 aaKnown RBP16.39■□□□□ 0.21
LSM4-206ENST00000600289 PEX11BO96011 259 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 CAPNS1P04632 268 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TBC1D3HP0C7X1 549 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 ADRB3P13945 408 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 PPP2CBP62714 309 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 PPP2CAP67775 309 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 NSUN2Q08J23 767 aaKnown RBP eCLIP16.39■□□□□ 0.21
LSM4-206ENST00000600289 GALNT2Q10471 571 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 MMRN1Q13201 1228 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 POM121L1PQ3SYA9 428 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 ATXN7L2Q5T6C5 722 aaPredicted RBP16.39■□□□□ 0.21
LSM4-206ENST00000600289 TBC1D3GQ6DHY5 549 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TBC1D3CQ6IPX1 549 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 C11orf63Q6NUN7 778 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 GDPD4Q6W3E5 623 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 RAD9BQ6WBX8 426 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 ARHGAP36Q6ZRI8 547 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TP53INP2Q8IXH6 220 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 RHOT1Q8IXI2 618 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TBC1D3Q8IZP1 549 aaPredicted RBP16.39■□□□□ 0.21
LSM4-206ENST00000600289 RYBPQ8N488 228 aaPredicted RBP16.39■□□□□ 0.21
LSM4-206ENST00000600289 FATE1Q969F0 183 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TUBGCP5Q96RT8 1024 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 BAG1Q99933 345 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms