RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	SPACA3	Q8IXA5	215 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	PLPP6	Q8IY26	295 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	RBFA	Q8N0V3	343 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	PYROXD2	Q8N2H3	581 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	FAM181A	Q8N9Y4	354 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	OR2AP1	Q8NGE2	309 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	FAM174A	Q8TBP5	190 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	MAPK15	Q8TD08	544 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	LMX1A	Q8TE12	382 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	CENPI	Q92674	756 aa	Predicted RBP	10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	TBC1D31	Q96DN5	1066 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	KLHL32	Q96NJ5	620 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	LENG8	Q96PV6	779 aa	Predicted RBP	10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	DEPDC7	Q96QD5	511 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	DUSP23	Q9BVJ7	150 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	KLC2	Q9H0B6	622 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	MAGEH1	Q9H213	219 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	TCEAL2	Q9H3H9	227 aa	Predicted RBP	10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	NOL6	Q9H6R4	1146 aa	Known RBP	10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	HPCAL4	Q9UM19	191 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	MGA	Q8IWI9	3026 aa		10.69	□□□□□ -0.7
LSM4-205	ENST00000597776	PTPRQ	Q9UMZ3	2332 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	ATM	Q13315	3056 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	CPED1	A4D0V7	1026 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	AREL1	O15033	823 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	CASC3	O15234	703 aa	Known RBP	10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	AQP9	O43315	295 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	BUB1	O43683	1085 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	KDELR3	O43731	214 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	MMP20	O60882	483 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	GSR	P00390	522 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	GP1BA	P07359	652 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	KRT3	P12035	628 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	UNG	P13051	313 aa	Predicted RBP	10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	TGM2	P21980	687 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	IGFALS	P35858	605 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	GEMIN4	P57678	1058 aa	Known RBP	10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	SNRPD1	P62314	119 aa	Known RBP	10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	ZCCHC8	Q6NZY4	707 aa	Known RBP	10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	CRTC1	Q6UUV9	634 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	GDPD4	Q6W3E5	623 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	TRIM72	Q6ZMU5	477 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	EFL1	Q7Z2Z2	1120 aa	Known RBP	10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	VPS36	Q86VN1	386 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	ENOX1	Q8TC92	643 aa	Known RBP	10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	RAB7B	Q96AH8	199 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	LGMN	Q99538	433 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	ABCG4	Q9H172	646 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	ADAM22	Q9P0K1	906 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	PNMA8B	Q9ULN7	279 aa	Predicted RBP	10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	SIK3	Q9Y2K2	1263 aa		10.68	□□□□□ -0.7
LSM4-205	ENST00000597776	CHD5	Q8TDI0	1954 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	CXorf51A	A0A1B0GTR3	108 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776		A0A1W2PNU3	283 aa	Predicted RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	ATXN7	O15265	892 aa	Predicted RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	INSIG1	O15503	277 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	CCP110	O43303	1012 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	GCAT	O75600	419 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	C1QL1	O75973	258 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	POP4	O95707	220 aa	Known RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	GPD1	P21695	349 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	EPHB2	P29323	1055 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	STAT1	P42224	750 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	NSF	P46459	744 aa	Known RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	DUSP3	P51452	185 aa	Predicted RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	CXADR	P78310	365 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	C1orf61	Q13536	156 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	SYCP1	Q15431	976 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	CLEC16A	Q2KHT3	1053 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	PERM1	Q5SV97	790 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	FKBP15	Q5T1M5	1219 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	WDR59	Q6PJI9	974 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	TTC7B	Q86TV6	843 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	ZSCAN30	Q86W11	494 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	RTL3	Q8N8U3	475 aa	Known RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	DENND6B	Q8NEG7	585 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	ASB12	Q8WXK4	309 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	SLC39A7	Q92504	469 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	NTAN1	Q96AB6	310 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	CENPT	Q96BT3	561 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	HMCES	Q96FZ2	354 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	HIC2	Q96JB3	615 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	EXOC2	Q96KP1	924 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	GDAP1L1	Q96MZ0	367 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	WRAP53	Q9BUR4	548 aa	Known RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	LRRC61	Q9BV99	259 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	SELENOO	Q9BVL4	669 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	OSBPL1A	Q9BXW6	950 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	USP29	Q9HBJ7	922 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	MBNL1	Q9NR56	388 aa	Known RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	SEPT11	Q9NVA2	429 aa	Known RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	EVA1B	Q9NVM1	165 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	FANCL	Q9NW38	375 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	APOBEC3B	Q9UH17	382 aa	Known RBP	10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	CSNK1G3	Q9Y6M4	447 aa		10.67	□□□□□ -0.7
LSM4-205	ENST00000597776	COL27A1	Q8IZC6	1860 aa	Predicted RBP	10.66	□□□□□ -0.7
LSM4-205	ENST00000597776	PMS2P1	A4D2B8	440 aa		10.66	□□□□□ -0.7
LSM4-205	ENST00000597776	MUSK	O15146	869 aa		10.66	□□□□□ -0.7
LSM4-205	ENST00000597776	CREB3	O43889	395 aa		10.66	□□□□□ -0.7
LSM4-205	ENST00000597776	PIGN	O95427	931 aa		10.66	□□□□□ -0.7

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