RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZBED8Q8IZ13 594 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 OR2AP1Q8NGE2 309 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 MAFAQ8NHW3 353 aaPredicted RBP15.43■□□□□ 0.06
TRIM28-209ENST00000597423 TUBGCP5Q96RT8 1024 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 P2RY13Q9BPV8 354 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 FICDQ9BVA6 458 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 PABPC3Q9H361 631 aaKnown RBP15.43■□□□□ 0.06
TRIM28-209ENST00000597423 SAMD15Q9P1V8 674 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 LHX3Q9UBR4 397 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 ACTL7AQ9Y615 435 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 MUSKO15146 869 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 TRIM24O15164 1050 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 SMAD6O43541 496 aaKnown RBP15.42■□□□□ 0.06
TRIM28-209ENST00000597423 SPAG6O75602 509 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 CPP00450 1065 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 AGTP01019 485 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 MMP2P08253 660 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 GSTA2P09210 222 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 HLA-DPA1P20036 260 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 PHBP35232 272 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 ADRA1AP35348 466 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 GALK1P51570 392 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 KDSRQ06136 332 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 BCL2L1Q07817 233 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 TDGQ13569 410 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 SPARCL1Q14515 664 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 PCSK7Q16549 785 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 MYLK3Q32MK0 819 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 CCDC38Q502W7 563 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 FNDC3BQ53EP0 1204 aaKnown RBP15.42■□□□□ 0.06
TRIM28-209ENST00000597423 DGKKQ5KSL6 1271 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 FAM182AQ5T1J6 154 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 ALS2CLQ60I27 953 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 TMEM215Q68D42 235 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 DENND2CQ68D51 928 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 C22orf39Q6P5X5 142 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 NDUFAF2Q8N183 169 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 PAF1Q8N7H5 531 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 OR52K1Q8NGK4 314 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 KCNV2Q8TDN2 545 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 UBLCP1Q8WVY7 318 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-209ENST00000597423 ZNF419Q96HQ0 510 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-209ENST00000597423 MRGPRX2Q96LB1 330 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 SRPK1Q96SB4 655 aaKnown RBP15.42■□□□□ 0.06
TRIM28-209ENST00000597423 GORASP1Q9BQQ3 440 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 CCDC77Q9BR77 488 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 TXLNGYQ9BZA5 131 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 IL22Q9GZX6 179 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 ATP13A3Q9H7F0 1226 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 ARNT2Q9HBZ2 717 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 HECAQ9UBI9 543 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-209ENST00000597423 PRKAG3Q9UGI9 489 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 SUN2Q9UH99 717 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 SLCO3A1Q9UIG8 710 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 RAI2Q9Y5P3 530 aa15.42■□□□□ 0.06
TRIM28-209ENST00000597423 LOC285095A0A1B0GVY8 99 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 TTC4O95801 387 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 NDST3O95803 873 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 ALADP13716 330 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 SERPINA4P29622 427 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 STK19P49842 368 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-209ENST00000597423 SESN2P58004 480 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-209ENST00000597423 RPL26P61254 145 aaKnown RBP15.41■□□□□ 0.06
TRIM28-209ENST00000597423 GRSF1Q12849 480 aaKnown RBP eCLIP15.41■□□□□ 0.06
TRIM28-209ENST00000597423 CASP8Q14790 479 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 CASC4Q6P4E1 433 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 CYB5D2Q8WUJ1 264 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 LRIG1Q96JA1 1093 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 PKNOX2Q96KN3 472 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 EXOC2Q96KP1 924 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 MRGPRX3Q96LB0 322 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 PWWP2AQ96N64 755 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 ZNF641Q96N77 438 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-209ENST00000597423 EBNA1BP2Q99848 306 aaKnown RBP15.41■□□□□ 0.06
TRIM28-209ENST00000597423 CPEB1Q9BZB8 566 aaKnown RBP15.41■□□□□ 0.06
TRIM28-209ENST00000597423 TM6SF2Q9BZW4 377 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 VIPAS39Q9H9C1 493 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 RPL26L1Q9UNX3 145 aaKnown RBP15.41■□□□□ 0.06
TRIM28-209ENST00000597423 STARD13Q9Y3M8 1113 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 MAD1L1Q9Y6D9 718 aa15.41■□□□□ 0.06
TRIM28-209ENST00000597423 LOC730098B7Z3J9 87 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 PRRT4C9JH25 899 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 SPECC1L-ADORA2AF8WAN1 911 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 SOCS5O75159 536 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 USP12O75317 370 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 AVILO75366 819 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 FGF1P05230 155 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 SRFP11831 508 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 NFKBIAP25963 317 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 HSD17B3P37058 310 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 ELK3P41970 407 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 MAGEA3P43357 314 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 SLC1A5Q15758 541 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 ATXN7L2Q5T6C5 722 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-209ENST00000597423 ARMC12Q5T9G4 340 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 SDE2Q6IQ49 451 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 NLRP9Q7RTR0 991 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 KDELC2Q7Z4H8 507 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 CROCCP2Q86T23 111 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 PHTF2Q8N3S3 785 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms