RNA–Protein interactions for RNA: ENST00000595659.5

CCDC9-202, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 356 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-202ENST00000595659 CNPY3Q9BT09 278 aa17.28■□□□□ 0.36
CCDC9-202ENST00000595659 C1QTNF2Q9BXJ5 285 aa17.28■□□□□ 0.36
CCDC9-202ENST00000595659 KLF15Q9UIH9 416 aa17.28■□□□□ 0.36
CCDC9-202ENST00000595659 DSPP15924 2871 aaKnown RBP17.28■□□□□ 0.36
CCDC9-202ENST00000595659 LAMA5O15230 3695 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 ATMINO43313 823 aaPredicted RBP17.27■□□□□ 0.36
CCDC9-202ENST00000595659 MMP20O60882 483 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 FERP16591 822 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 RHOAP61586 193 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 PDE1CQ14123 709 aaPredicted RBP17.27■□□□□ 0.36
CCDC9-202ENST00000595659 ANO6Q4KMQ2 910 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 IRF2BP2Q7Z5L9 587 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 RAB7BQ96AH8 199 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 APOLD1Q96LR9 279 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 GDAP1L1Q96MZ0 367 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 EPAS1Q99814 870 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 TTYH3Q9C0H2 523 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 CLCA2Q9UQC9 943 aa17.27■□□□□ 0.36
CCDC9-202ENST00000595659 COL5A1P20908 1838 aaPredicted RBP17.26■□□□□ 0.35
CCDC9-202ENST00000595659 SPTY2D1-AS1A0A0U1RR47 76 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 CXorf51AA0A1B0GTR3 108 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 ZSCAN5CA6NGD5 496 aaPredicted RBP17.26■□□□□ 0.35
CCDC9-202ENST00000595659 K7ESM1 405 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 IGSF6O95976 241 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 MT-CO3P00414 261 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 TIMP2P16035 220 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 RABIFP47224 123 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 SERINC3Q13530 473 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 CYTH1Q15438 398 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 CA9Q16790 459 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 VPS36Q86VN1 386 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 DCP2Q8IU60 420 aaKnown RBP17.26■□□□□ 0.35
CCDC9-202ENST00000595659 CELF6Q96J87 481 aaKnown RBP17.26■□□□□ 0.35
CCDC9-202ENST00000595659 LENG8Q96PV6 779 aaPredicted RBP17.26■□□□□ 0.35
CCDC9-202ENST00000595659 WRAP53Q9BUR4 548 aaKnown RBP17.26■□□□□ 0.35
CCDC9-202ENST00000595659 OSBPL1AQ9BXW6 950 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 CATSPERBQ9H7T0 1116 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 GPR27Q9NS67 375 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 NLGN3Q9NZ94 848 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 TMEM63CQ9P1W3 806 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 CELSR3Q9NYQ7 3312 aa17.26■□□□□ 0.35
CCDC9-202ENST00000595659 J3KR12 359 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 AREL1O15033 823 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 SCAMP1O15126 338 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 TLX3O43711 291 aaPredicted RBP17.25■□□□□ 0.35
CCDC9-202ENST00000595659 PIGNO95427 931 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 CSF2P04141 144 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 CCDC172P0C7W6 258 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 ALPPL2P10696 532 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 CKMT1AP12532 417 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 JUNDP17535 347 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 YBEYP58557 167 aaPredicted RBP17.25■□□□□ 0.35
CCDC9-202ENST00000595659 TPI1P60174 286 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 HNRNPKP61978 463 aaKnown RBP eCLIP17.25■□□□□ 0.35
CCDC9-202ENST00000595659 E2F1Q01094 437 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 RAD51Q06609 339 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 EIF2B5Q13144 721 aaKnown RBP17.25■□□□□ 0.35
CCDC9-202ENST00000595659 MAMLD1Q13495 774 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 COL9A2Q14055 689 aaPredicted RBP17.25■□□□□ 0.35
CCDC9-202ENST00000595659 PARGQ86W56 976 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 ZNF548Q8NEK5 533 aaPredicted RBP17.25■□□□□ 0.35
CCDC9-202ENST00000595659 FAM174AQ8TBP5 190 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 LMX1AQ8TE12 382 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 RFFLQ8WZ73 363 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 IFT43Q96FT9 208 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 SYT11Q9BT88 431 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 TCEAL2Q9H3H9 227 aaPredicted RBP17.25■□□□□ 0.35
CCDC9-202ENST00000595659 SCUBE2Q9NQ36 999 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 MBNL1Q9NR56 388 aaKnown RBP17.25■□□□□ 0.35
CCDC9-202ENST00000595659 LHX3Q9UBR4 397 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 PCSK1NQ9UHG2 260 aa17.25■□□□□ 0.35
CCDC9-202ENST00000595659 LY6G6EA0A0G2JKS1 128 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 NEMP2A6NFY4 417 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 LRRC53A6NM62 1247 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 WASH4PA8MWX3 477 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 OPA1O60313 960 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 MBD3O95983 291 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 NME1P15531 152 aaKnown RBP17.24■□□□□ 0.35
CCDC9-202ENST00000595659 PSMA2P25787 234 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 ITPKBP27987 946 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 PFN3P60673 137 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 DEFB133Q30KQ1 61 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 PARP15Q460N3 678 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 INO80DQ53TQ3 878 aaPredicted RBP17.24■□□□□ 0.35
CCDC9-202ENST00000595659 RBFAQ8N0V3 343 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 UMODL1-AS1Q8N2C9 162 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 ARFGAP1Q8N6T3 406 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 DCBLD1Q8N8Z6 715 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 CXorf40AQ8TE69 158 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 CENPTQ96BT3 561 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 NCAPGQ9BPX3 1015 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 TRIM7Q9C029 511 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 NRSN2Q9GZP1 204 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 DHX35Q9H5Z1 703 aaKnown RBP17.24■□□□□ 0.35
CCDC9-202ENST00000595659 RTN4Q9NQC3 1192 aaKnown RBP17.24■□□□□ 0.35
CCDC9-202ENST00000595659 UBA2Q9UBT2 640 aaPredicted RBP17.24■□□□□ 0.35
CCDC9-202ENST00000595659 AP4E1Q9UPM8 1137 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 COQ6Q9Y2Z9 468 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 PCDHB1Q9Y5F3 818 aa17.24■□□□□ 0.35
CCDC9-202ENST00000595659 U3KQA8 63 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms