RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 CCDC14Q49A88 953 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 SEL1L3Q68CR1 1132 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 KIAA1161Q6NSJ0 714 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 Q6ZSR6 202 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 STRADAQ7RTN6 431 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 LUZP1Q86V48 1076 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 RETREG3Q86VR2 466 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 NLRP14Q86W24 1093 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 FAM131BQ86XD5 332 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 OR13H1Q8NG92 308 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 RXFP2Q8WXD0 754 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 KLK6Q92876 244 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 ARHGEF2Q92974 986 aaKnown RBP10.59□□□□□ -0.71
VPS4B-207ENST00000591519 RAB7BQ96AH8 199 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 VOPP1Q96AW1 172 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 C1QTNF2Q9BXJ5 285 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 MAGEH1Q9H213 219 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 GANQ9H2C0 597 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 HSD3B7Q9H2F3 369 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 FAM207AQ9NSI2 230 aaPredicted RBP10.59□□□□□ -0.71
VPS4B-207ENST00000591519 UCKL1Q9NWZ5 548 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 LIMA1Q9UHB6 759 aaKnown RBP10.59□□□□□ -0.71
VPS4B-207ENST00000591519 CLCA2Q9UQC9 943 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 DAAM1Q9Y4D1 1078 aa10.59□□□□□ -0.71
VPS4B-207ENST00000591519 TDRD6O60522 2096 aaKnown RBP10.59□□□□□ -0.71
VPS4B-207ENST00000591519 SPTY2D1-AS1A0A0U1RR47 76 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 POM121BA6NF01 834 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 C2CD4BA6NLJ0 364 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 A6NNZ2 444 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 SCAMP1O15126 338 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 TSPAN6O43657 245 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 TLX3O43711 291 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-207ENST00000591519 GP1BAP07359 652 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 UNGP13051 313 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-207ENST00000591519 RHOQP17081 205 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 PTPN9P43378 593 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 MAPKAPK2P49137 400 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 CCNHP51946 323 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-207ENST00000591519 GSCP56915 257 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-207ENST00000591519 JAM2P57087 298 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 GEMIN4P57678 1058 aaKnown RBP10.58□□□□□ -0.72
VPS4B-207ENST00000591519 CLDN2P57739 230 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 ATP11AP98196 1134 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 FMO1Q01740 532 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 PTP4A2Q12974 167 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 SYCP1Q15431 976 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 ARL13BQ3SXY8 428 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 CDCP2Q5VXM1 449 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 KYAT3Q6YP21 454 aaKnown RBP10.58□□□□□ -0.72
VPS4B-207ENST00000591519 TRIM72Q6ZMU5 477 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 SLC22A18ASQ8N1D0 253 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 EMC1Q8N766 993 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 GRIN3AQ8TCU5 1115 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 FGF11Q92914 225 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 BBC3Q96PG8 261 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-207ENST00000591519 KLF6Q99612 283 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-207ENST00000591519 BPIFA3Q9BQP9 254 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 DUSP23Q9BVJ7 150 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 USP29Q9HBJ7 922 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 FZD3Q9NPG1 666 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 NLRC4Q9NPP4 1024 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 NDFIP2Q9NV92 336 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 TMEM248Q9NWD8 314 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 NLGN3Q9NZ94 848 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 NEU3Q9UQ49 428 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 AK5Q9Y6K8 562 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 CSNK1G3Q9Y6M4 447 aa10.58□□□□□ -0.72
VPS4B-207ENST00000591519 LRRC10BA6NIK2 292 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 LGALS16A8MUM7 142 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 EPHB6O15197 1021 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 RAD51BO15315 384 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 KDELR3O43731 214 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 LZTS3O60299 673 aaPredicted RBP10.57□□□□□ -0.72
VPS4B-207ENST00000591519 LRIG2O94898 1065 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 POP4O95707 220 aaKnown RBP10.57□□□□□ -0.72
VPS4B-207ENST00000591519 MT-CO3P00414 261 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 CSF2P04141 144 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 PLEKP08567 350 aaPredicted RBP10.57□□□□□ -0.72
VPS4B-207ENST00000591519 SDC4P31431 198 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 SOX5P35711 763 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 ACVRL1P37023 503 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 ABCG1P45844 678 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 RABIFP47224 123 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 DNA2P51530 1060 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 HDAC4P56524 1084 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 POLR2FP61218 127 aaKnown RBP10.57□□□□□ -0.72
VPS4B-207ENST00000591519 HNRNPKP61978 463 aaKnown RBP eCLIP10.57□□□□□ -0.72
VPS4B-207ENST00000591519 SEMG2Q02383 582 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 FZD2Q14332 565 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 IQCB1Q15051 598 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 C15orf59Q2T9L4 293 aaPredicted RBP10.57□□□□□ -0.72
VPS4B-207ENST00000591519 MYLK3Q32MK0 819 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 RAB6CQ53S08 254 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 HS1BP3Q53T59 392 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 ZNF805Q5CZA5 627 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 PHF13Q86YI8 300 aaPredicted RBP10.57□□□□□ -0.72
VPS4B-207ENST00000591519 DRC7Q8IY82 874 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 NEK11Q8NG66 645 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 OR2AP1Q8NGE2 309 aa10.57□□□□□ -0.72
VPS4B-207ENST00000591519 JOSD2Q8TAC2 188 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms