RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 UCKL1Q9NWZ5 548 aa13.61□□□□□ -0.23
TRAF4-214ENST00000580073 ASXL3Q9C0F0 2248 aa13.61□□□□□ -0.23
TRAF4-214ENST00000580073 SMG1Q96Q15 3661 aaKnown RBP13.61□□□□□ -0.23
TRAF4-214ENST00000580073 SPTY2D1-AS1A0A0U1RR47 76 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 TOR1BO14657 336 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 AQP9O43315 295 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 CSO75390 466 aaKnown RBP13.6□□□□□ -0.23
TRAF4-214ENST00000580073 TCEA3O75764 348 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 PLEKP08567 350 aaPredicted RBP13.6□□□□□ -0.23
TRAF4-214ENST00000580073 FERP16591 822 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 MLLT3P42568 568 aaPredicted RBP13.6□□□□□ -0.23
TRAF4-214ENST00000580073 LSSP48449 732 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 MAPKAPK2P49137 400 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 DNA2P51530 1060 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 CCNHP51946 323 aaPredicted RBP13.6□□□□□ -0.23
TRAF4-214ENST00000580073 NOMO3P69849 1222 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 GNA12Q03113 381 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 RAD51Q06609 339 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 TAF1BQ53T94 588 aaPredicted RBP13.6□□□□□ -0.23
TRAF4-214ENST00000580073 CARD16Q5EG05 197 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 SEL1L3Q68CR1 1132 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 SPECC1LQ69YQ0 1117 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 WDR59Q6PJI9 974 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 IGF2-ASQ6U949 168 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 LINGO4Q6UY18 593 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 PLPP6Q8IY26 295 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 ZNF683Q8IZ20 524 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 SLC22A18ASQ8N1D0 253 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 CHST14Q8NCH0 376 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 IFI44Q8TCB0 444 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 ASB12Q8WXK4 309 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 CPA5Q8WXQ8 436 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 NAT6Q93015 286 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 ISG20Q96AZ6 181 aaKnown RBP13.6□□□□□ -0.23
TRAF4-214ENST00000580073 WBP1Q96G27 269 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 TBATAQ96M53 351 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 LENG8Q96PV6 779 aaPredicted RBP13.6□□□□□ -0.23
TRAF4-214ENST00000580073 TBCBQ99426 244 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 IL12RB2Q99665 862 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 AGPAT1Q99943 283 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 SPON2Q9BUD6 331 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 TNKS2Q9H2K2 1166 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 HAUS4Q9H6D7 363 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 ZDHHC6Q9H6R6 413 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 SPASTQ9UBP0 616 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 SALL4Q9UJQ4 1053 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 ZFR2Q9UPR6 939 aaKnown RBP13.6□□□□□ -0.23
TRAF4-214ENST00000580073 WASF2Q9Y6W5 498 aa13.6□□□□□ -0.23
TRAF4-214ENST00000580073 RP1P56715 2156 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 COL6A6A6NMZ7 2263 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 A0A0D9SEW6 157 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 ZSCAN5CA6NGD5 496 aaPredicted RBP13.59□□□□□ -0.23
TRAF4-214ENST00000580073 K7ERQ8 282 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 K7ESM1 405 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 TPP1O14773 563 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 SMAD6O43541 496 aaKnown RBP13.59□□□□□ -0.23
TRAF4-214ENST00000580073 SRGAP2O75044 1071 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 USP12O75317 370 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 CSF2P04141 144 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 UNGP13051 313 aaPredicted RBP13.59□□□□□ -0.23
TRAF4-214ENST00000580073 RBMS1P29558 406 aaKnown RBP13.59□□□□□ -0.23
TRAF4-214ENST00000580073 PRKCIP41743 596 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 THOP1P52888 689 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 CLDN2P57739 230 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 SNRPD1P62314 119 aaKnown RBP13.59□□□□□ -0.23
TRAF4-214ENST00000580073 ZBED6P86452 979 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 PTP4A2Q12974 167 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 PDE1CQ14123 709 aaPredicted RBP13.59□□□□□ -0.23
TRAF4-214ENST00000580073 NR0B2Q15466 257 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 ASIC2Q16515 512 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 NAA35Q5VZE5 725 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 PARS2Q7L3T8 475 aaKnown RBP13.59□□□□□ -0.23
TRAF4-214ENST00000580073 ZNF677Q86XU0 584 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 XYLT1Q86Y38 959 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 OR7D4Q8NG98 312 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 SLC30A5Q8TAD4 765 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 TAS2R14Q9NYV8 317 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 MPP6Q9NZW5 540 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 PCDHB1Q9Y5F3 818 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 FADS3Q9Y5Q0 445 aa13.59□□□□□ -0.23
TRAF4-214ENST00000580073 GCN1Q92616 2671 aaKnown RBP13.59□□□□□ -0.23
TRAF4-214ENST00000580073 DDX3XO00571 662 aaKnown RBP eCLIP13.58□□□□□ -0.242e-7■□□□□ 8.4
TRAF4-214ENST00000580073 GSRP00390 522 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 MPOP05164 745 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 JUNDP17535 347 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 DESP17661 470 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 SDC4P31431 198 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 ADKP55263 362 aaKnown RBP13.58□□□□□ -0.24
TRAF4-214ENST00000580073 NRG1Q02297 640 aaPredicted RBP13.58□□□□□ -0.24
TRAF4-214ENST00000580073 FZD2Q14332 565 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 CLEC16AQ2KHT3 1053 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 ZNF805Q5CZA5 627 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 RBM44Q6ZP01 1051 aaKnown RBP13.58□□□□□ -0.24
TRAF4-214ENST00000580073 ZNF605Q86T29 641 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 DRC7Q8IY82 874 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 RYBPQ8N488 228 aaPredicted RBP13.58□□□□□ -0.24
TRAF4-214ENST00000580073 MRFAP1L1Q96HT8 127 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 HIC2Q96JB3 615 aa13.58□□□□□ -0.24
TRAF4-214ENST00000580073 HECAQ9UBI9 543 aaPredicted RBP13.58□□□□□ -0.24
TRAF4-214ENST00000580073 LUC7L2Q9Y383 392 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms