RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 MLNP12872 115 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 TNNT3P45378 269 aaPredicted RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 VSNL1P62760 191 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 ZNF234Q14588 700 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 HNRNPA1L2Q32P51 320 aaKnown RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 FAM182AQ5T1J6 154 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 FSTL4Q6MZW2 842 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 KDELC1Q6UW63 502 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 SERPINA13PQ6UXR4 307 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 ZNF852Q6ZMS4 543 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 TRMT11Q7Z4G4 463 aaKnown RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 RNF135Q8IUD6 432 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 ZCCHC9Q8N567 271 aaKnown RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 SPATA22Q8NHS9 363 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 FBXO25Q8TCJ0 367 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 SHDQ96IW2 340 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 EXOC2Q96KP1 924 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 TUBGCP5Q96RT8 1024 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 FMO2Q99518 471 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 FSD1LQ9BXM9 530 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 CPEB1Q9BZB8 566 aaKnown RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 TM6SF2Q9BZW4 377 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 PHACTR1Q9C0D0 580 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 TMEM245Q9H330 911 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 NOD2Q9HC29 1040 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 XAB2Q9HCS7 855 aaKnown RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 ARIH1Q9Y4X5 557 aaPredicted RBP10.87□□□□□ -0.67
SS18-213ENST00000579640 C5orf42Q9H799 3197 aa10.87□□□□□ -0.67
SS18-213ENST00000579640 UQCRHLA0A096LP55 91 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 TTC34A8MYJ7 566 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 SOCS5O75159 536 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 PPFIA2O75334 1257 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 PMPCBO75439 489 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 TMEM63AO94886 807 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 UQCRHP07919 91 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 ECHS1P30084 290 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 KIR2DL1P43626 348 aaPredicted RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 WNT3AP56704 352 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 MRPS21P82921 87 aaKnown RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 ENPP2Q13822 863 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 BRD3Q15059 726 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 MYLK3Q32MK0 819 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 MAP9Q49MG5 647 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 HSF5Q4G112 596 aaPredicted RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 ATXN7L2Q5T6C5 722 aaPredicted RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 ANKRD22Q5VYY1 191 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 EGFLAMQ63HQ2 1017 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 Q6ZVU0 165 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 RYBPQ8N488 228 aaPredicted RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.86□□□□□ -0.67
SS18-213ENST00000579640 ZNF513Q8N8E2 541 aaPredicted RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 IPMKQ8NFU5 416 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 LRIG1Q96JA1 1093 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 FEM1CQ96JP0 617 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 MRGPRX2Q96LB1 330 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 TBL1YQ9BQ87 522 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 TNKS2Q9H2K2 1166 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 ATP13A3Q9H7F0 1226 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 ARHGEF3Q9NR81 526 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 UBP1Q9NZI7 540 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 HECAQ9UBI9 543 aaPredicted RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 NFU1Q9UMS0 254 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 MRPS17Q9Y2R5 130 aaKnown RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 A0A1W2PQ67 120 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 TCRBV7S3A2A0A539 114 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 ALOX15BO15296 676 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 EIF3HO15372 352 aaKnown RBP eCLIP10.86□□□□□ -0.67
SS18-213ENST00000579640 ERLIN1O75477 346 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 EGFP01133 1207 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 SERPINA4P29622 427 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 ADRA1AP35348 466 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 IL12RB1P42701 662 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 CCNHP51946 323 aaPredicted RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 ARL4CP56559 192 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 CDK18Q07002 472 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 BCL2L1Q07817 233 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 CBLBQ13191 982 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 IER5LQ5T953 404 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 SDE2Q6IQ49 451 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 LRRC8BQ6P9F7 803 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 DPY19L3Q6ZPD9 716 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 SFTPA1Q8IWL2 248 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 GJD3Q8N144 294 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 PDIK1LQ8N165 341 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 OR2A12Q8NGT7 310 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 EZH1Q92800 747 aaPredicted RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 PTPRN2Q92932 1015 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 IFT43Q96FT9 208 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 HEPHQ9BQS7 1158 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 EVLQ9UI08 416 aaPredicted RBP10.86□□□□□ -0.67
SS18-213ENST00000579640 FBXL21Q9UKT6 434 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 HCN2Q9UL51 889 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 RAI2Q9Y5P3 530 aa10.86□□□□□ -0.67
SS18-213ENST00000579640 XIRP2A4UGR9 3374 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 LOC285095A0A1B0GVY8 99 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 CCDC151A5D8V7 595 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 SHISA7A6NL88 538 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 HLA-DPA1P20036 260 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 CDH17Q12864 832 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 ELAVL3Q14576 367 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms