RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TMCO4Q5TGY1 634 aa19.76■□□□□ 0.75
SS18-209ENST00000578595 AFMIDQ63HM1 303 aa19.76■□□□□ 0.75
SS18-209ENST00000578595 TSC1Q92574 1164 aa19.76■□□□□ 0.75
SS18-209ENST00000578595 LRIG1Q96JA1 1093 aa19.76■□□□□ 0.75
SS18-209ENST00000578595 BAG1Q99933 345 aaPredicted RBP19.76■□□□□ 0.75
SS18-209ENST00000578595 HDAC8Q9BY41 377 aa19.76■□□□□ 0.75
SS18-209ENST00000578595 A0A1W2PQU0 124 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 C16orf96A6NNT2 1141 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 CDX4O14627 284 aaPredicted RBP19.75■□□□□ 0.75
SS18-209ENST00000578595 INSIG1O15503 277 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 MFSD11O43934 449 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 NEBLO76041 1014 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 MAP3K6O95382 1288 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 PIGNO95427 931 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 CER1O95813 267 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 PRLRP16471 622 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 GRIA4P48058 902 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 TAS2R38P59533 333 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 RACK1P63244 317 aaKnown RBP19.75■□□□□ 0.75
SS18-209ENST00000578595 LBRQ14739 615 aaKnown RBP19.75■□□□□ 0.75
SS18-209ENST00000578595 SLC45A4Q5BKX6 768 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 KIAA1328Q86T90 577 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 BBS5Q8N3I7 341 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 TSEN2Q8NCE0 465 aaKnown RBP19.75■□□□□ 0.75
SS18-209ENST00000578595 SKA1Q96BD8 255 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 ZDHHC5Q9C0B5 715 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 IMPACTQ9P2X3 320 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 SEPT3Q9UH03 358 aa19.75■□□□□ 0.75
SS18-209ENST00000578595 TPX2Q9ULW0 747 aaKnown RBP19.75■□□□□ 0.75
SS18-209ENST00000578595 SLC31A1O15431 190 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 LCA5LO95447 670 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 COMTP21964 271 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 CD38P28907 300 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 SLC1A1P43005 524 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 RFTN1Q14699 578 aaPredicted RBP19.74■□□□□ 0.75
SS18-209ENST00000578595 NCBP2-AS2Q69YL0 99 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 NAPEPLDQ6IQ20 393 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 TRIM69Q86WT6 500 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 RHOT1Q8IXI2 618 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 ACRBPQ8NEB7 543 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 RAPGEF5Q92565 580 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 FAM131CQ96AQ9 280 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 ZNF830Q96NB3 372 aaPredicted RBP19.74■□□□□ 0.75
SS18-209ENST00000578595 MAK16Q9BXY0 300 aaKnown RBP19.74■□□□□ 0.75
SS18-209ENST00000578595 GOLPH3Q9H4A6 298 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 GAREM1Q9H706 876 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 EBF2Q9HAK2 575 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 ITM2BQ9Y287 266 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 ANKRD6Q9Y2G4 727 aa19.74■□□□□ 0.75
SS18-209ENST00000578595 BUB1BO60566 1050 aaPredicted RBP19.73■□□□□ 0.75
SS18-209ENST00000578595 KDELR1P24390 212 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 IL4RP24394 825 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 SERPINA4P29622 427 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 ABL2P42684 1182 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 RGRP47804 291 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 SCNN1BP51168 640 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 RENBPP51606 427 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 ARSEP51690 589 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 SLC10A7Q0GE19 358 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 GRM3Q14832 879 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 SEL1L3Q68CR1 1132 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 IL27RAQ6UWB1 636 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 RAD9BQ6WBX8 426 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 SRLQ86TD4 932 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 TTC7BQ86TV6 843 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 HORMAD1Q86X24 394 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 PCDH19Q8TAB3 1148 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 C1orf216Q8TAB5 229 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 FAM71BQ8TC56 605 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 RNF25Q96BH1 459 aaPredicted RBP19.73■□□□□ 0.75
SS18-209ENST00000578595 ZNF599Q96NL3 588 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 FZD3Q9NPG1 666 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 TTLL3Q9Y4R7 772 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 SNX11Q9Y5W9 270 aa19.73■□□□□ 0.75
SS18-209ENST00000578595 CACNA1AO00555 2505 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 LATO43561 262 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 DYNLT1P63172 113 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 ITKQ08881 620 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 STAT4Q14765 748 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 KIF19Q2TAC6 998 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 PPM1JQ5JR12 505 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 KIAA1161Q6NSJ0 714 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 NEK5Q6P3R8 708 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 DAAM2Q86T65 1068 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 RFX6Q8HWS3 928 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 RAB7BQ96AH8 199 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 FEM1CQ96JP0 617 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 ORAI3Q9BRQ5 295 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 ATP13A3Q9H7F0 1226 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 DDX56Q9NY93 547 aaKnown RBP19.72■□□□□ 0.75
SS18-209ENST00000578595 GGT7Q9UJ14 662 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 DMTF1Q9Y222 760 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 CA5BQ9Y2D0 317 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 FADS3Q9Y5Q0 445 aa19.72■□□□□ 0.75
SS18-209ENST00000578595 PCNX2A6NKB5 2137 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 APOL1O14791 398 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 FECHP22830 423 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 AKT2P31751 481 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 NUDT1P36639 197 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 MMP13P45452 471 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms