RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TEX51A0A1B0GUA7 166 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 TOR1AO14656 332 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 MAPTP10636 758 aaKnown RBP10.96□□□□□ -0.65
CLK3-226ENST00000569406 GARTP22102 1010 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 SOX10P56693 466 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 TNFAIP2Q03169 654 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 SEMA3AQ14563 771 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 NBPF12Q5TAG4 269 aaPredicted RBP10.96□□□□□ -0.65
CLK3-226ENST00000569406 PLA2G4FQ68DD2 849 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 DENND5BQ6ZUT9 1274 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 ABHD11Q8NFV4 315 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 MAGED4Q96JG8 741 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 PCDHB18PQ96TA0 734 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 SEMA6AQ9H2E6 1030 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 HOMER2Q9NSB8 354 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 POLR3BQ9NW08 1133 aaPredicted RBP10.96□□□□□ -0.65
CLK3-226ENST00000569406 ZNF214Q9UL59 606 aaPredicted RBP10.96□□□□□ -0.65
CLK3-226ENST00000569406 SNX7Q9UNH6 387 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 DIMT1Q9UNQ2 313 aaKnown RBP10.96□□□□□ -0.65
CLK3-226ENST00000569406 MGAMO43451 1857 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 SLC22A1O15245 554 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 PRPF4O43172 522 aaKnown RBP eCLIP10.96□□□□□ -0.65
CLK3-226ENST00000569406 GRIN3BO60391 1043 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 TRIM16O95361 564 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 FGFR3P22607 806 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 YWHABP31946 246 aaKnown RBP10.96□□□□□ -0.65
CLK3-226ENST00000569406 RPL9P32969 192 aaKnown RBP10.96□□□□□ -0.65
CLK3-226ENST00000569406 WNT7BP56706 349 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 RAD51Q06609 339 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 PEX6Q13608 980 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 MTMR1Q13613 665 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 TOR2AQ5JU69 321 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 ARID3BQ8IVW6 561 aaPredicted RBP10.96□□□□□ -0.65
CLK3-226ENST00000569406 FIBCD1Q8N539 461 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 TMEM161BQ8NDZ6 487 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 SNAPC3Q92966 411 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 KREMEN1Q96MU8 473 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 PPP1R16BQ96T49 567 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 KIFC3Q9BVG8 833 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 NANOGQ9H9S0 305 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 OLAHQ9NV23 265 aa10.96□□□□□ -0.65
CLK3-226ENST00000569406 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.96□□□□□ -0.65
CLK3-226ENST00000569406 NOCTQ9UK39 431 aaKnown RBP10.96□□□□□ -0.65
CLK3-226ENST00000569406 C19orf81C9J6K1 198 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 AREL1O15033 823 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 ERBB2P04626 1255 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 PSKH1P11801 424 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 BGNP21810 368 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 SCRN3Q0VDG4 424 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 PLD1Q13393 1074 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 TOP3AQ13472 1001 aaPredicted RBP10.96□□□□□ -0.66
CLK3-226ENST00000569406 ADGRE1Q14246 886 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 HERC3Q15034 1050 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 ATG16L1Q676U5 607 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 HAUS6Q7Z4H7 955 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 CPNE8Q86YQ8 564 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 NIM1KQ8IY84 436 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 CPXCR1Q8N123 301 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 POC5Q8NA72 575 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 SIMC1Q8NDZ2 872 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 ZNF420Q8TAQ5 688 aaPredicted RBP10.96□□□□□ -0.66
CLK3-226ENST00000569406 SLC35G2Q8TBE7 412 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 GTF3C2Q8WUA4 911 aaPredicted RBP10.96□□□□□ -0.66
CLK3-226ENST00000569406 IPCEF1Q8WWN9 437 aaPredicted RBP10.96□□□□□ -0.66
CLK3-226ENST00000569406 ALG3Q92685 438 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 FBXW5Q969U6 566 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 ELMO3Q96BJ8 720 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 FAM84AQ96KN4 292 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 FAM118BQ9BPY3 351 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 SENP7Q9BQF6 1050 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 THAP2Q9H0W7 228 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 MIR1-1HGQ9H1L0 117 aa10.96□□□□□ -0.66
CLK3-226ENST00000569406 C20orf96Q9NUD7 363 aaPredicted RBP10.96□□□□□ -0.66
CLK3-226ENST00000569406 OR5K3A6NET4 321 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 ZNF98A6NK75 572 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 PDZK1P1A8MUH7 402 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 QARSP47897 775 aaKnown RBP10.95□□□□□ -0.66
CLK3-226ENST00000569406 CLCNKBP51801 687 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 ITGA8P53708 1063 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 SRP54P61011 504 aaKnown RBP10.95□□□□□ -0.66
CLK3-226ENST00000569406 FSTL1Q12841 308 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 ALG1LQ6GMV1 187 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 ERMP1Q7Z2K6 904 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 KBTBD6Q86V97 674 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 CHERPQ8IWX8 916 aaKnown RBP10.95□□□□□ -0.66
CLK3-226ENST00000569406 C4orf19Q8IY42 314 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 GALNT11Q8NCW6 608 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 PSMA8Q8TAA3 256 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 TCP10LQ8TDR4 215 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 GTF2H4Q92759 462 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 SGK3Q96BR1 496 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 B3GALT6Q96L58 329 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 SNX18Q96RF0 628 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 TMEM121Q9BTD3 319 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 TTPALQ9BTX7 342 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 BBS2Q9BXC9 721 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 TMEM117Q9H0C3 514 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 ITM2CQ9NQX7 267 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 TMLHEQ9NVH6 421 aa10.95□□□□□ -0.66
CLK3-226ENST00000569406 A0A0G2JMP0 313 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms