RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 DSG1Q02413 1049 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 ITGA9Q13797 1035 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 TSTD2Q5T7W7 516 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 C1orf53Q5VUE5 145 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 FAM91A1Q658Y4 838 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 ALYREFQ86V81 257 aaKnown RBP18.32■□□□□ 0.52
SMPD3-211ENST00000568373 LCA5Q86VQ0 697 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 WDR75Q8IWA0 830 aaKnown RBP18.32■□□□□ 0.52
SMPD3-211ENST00000568373 OR6Y1Q8NGX8 325 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 PLD4Q96BZ4 506 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 PRR11Q96HE9 360 aaPredicted RBP18.32■□□□□ 0.52
SMPD3-211ENST00000568373 ZNF599Q96NL3 588 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 C1QTNF1Q9BXJ1 281 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 MAGEH1Q9H213 219 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 CYP4F11Q9HBI6 524 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 TRPM5Q9NZQ8 1165 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 DNAJC16Q9Y2G8 782 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 STK38LQ9Y2H1 464 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 ZFP37Q9Y6Q3 630 aaPredicted RBP18.32■□□□□ 0.52
SMPD3-211ENST00000568373 A0A0D9SEW6 157 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 LOC285095A0A1B0GVY8 99 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 G3V2L1 256 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 PHGDHO43175 533 aaKnown RBP18.32■□□□□ 0.52
SMPD3-211ENST00000568373 PAPSS2O95340 614 aaPredicted RBP18.32■□□□□ 0.52
SMPD3-211ENST00000568373 ATP6V1G2O95670 118 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 SLC35E2BP0CK96 405 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 SAT1P21673 171 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 ZNF235Q14590 738 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 KRT72Q14CN4 511 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 SIRPB2Q5JXA9 342 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 RABGAP1LQ5R372 815 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 NEPROQ6NW34 567 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 TTC7BQ86TV6 843 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 DENND1CQ8IV53 801 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 SLC41A1Q8IVJ1 513 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.32■□□□□ 0.52
SMPD3-211ENST00000568373 PPP4R1Q8TF05 950 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 TOP1MTQ969P6 601 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 UTP4Q969X6 686 aaKnown RBP18.32■□□□□ 0.52
SMPD3-211ENST00000568373 TMEM169Q96HH4 297 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 SORT1Q99523 831 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 SEMA3CQ99985 751 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 NMUR2Q9GZQ4 415 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 CRISPLD2Q9H0B8 497 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 ARL8BQ9NVJ2 186 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 FBXO5Q9UKT4 447 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 YIPF1Q9Y548 306 aa18.32■□□□□ 0.52
SMPD3-211ENST00000568373 FAM95CA0A1B0GW59 222 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 ATP5BP06576 529 aaKnown RBP18.31■□□□□ 0.52
SMPD3-211ENST00000568373 APOA4P06727 396 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 ATXN1LP0C7T5 689 aaKnown RBP18.31■□□□□ 0.52
SMPD3-211ENST00000568373 HOXD9P28356 352 aaPredicted RBP18.31■□□□□ 0.52
SMPD3-211ENST00000568373 ALDH1A3P47895 512 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 CDH4P55283 916 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 ABCE1P61221 599 aaKnown RBP18.31■□□□□ 0.52
SMPD3-211ENST00000568373 GNA12Q03113 381 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 SLC12A1Q13621 1099 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 KIAA0408Q6ZU52 694 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 SLC39A11Q8N1S5 342 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 PTCD3Q96EY7 689 aaKnown RBP18.31■□□□□ 0.52
SMPD3-211ENST00000568373 TSNARE1Q96NA8 513 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 ZNF558Q96NG5 402 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 MID2Q9UJV3 735 aa18.31■□□□□ 0.52
SMPD3-211ENST00000568373 MROH6A6NGR9 719 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 H3BNC9 293 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 MUSKO15146 869 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 STC2O76061 302 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 KLKB1P03952 638 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 COL6A2P12110 1019 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 DNAJB1P25685 340 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 PTPN4P29074 926 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 ARRB2P32121 409 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 CD151P48509 253 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 RAB10P61026 200 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 RPS24P62847 133 aaKnown RBP18.3■□□□□ 0.52
SMPD3-211ENST00000568373 MFSD6LQ8IWD5 586 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 SUGP1Q8IWZ8 645 aaKnown RBP18.3■□□□□ 0.52
SMPD3-211ENST00000568373 OR13J1Q8NGT2 312 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 CALML6Q8TD86 181 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 ZNF689Q96CS4 500 aaPredicted RBP18.3■□□□□ 0.52
SMPD3-211ENST00000568373 TRMT2BQ96GJ1 504 aaKnown RBP18.3■□□□□ 0.52
SMPD3-211ENST00000568373 NSL1Q96IY1 281 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 PRICKLE1Q96MT3 831 aaPredicted RBP18.3■□□□□ 0.52
SMPD3-211ENST00000568373 TASP1Q9H6P5 420 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 TMEM39AQ9NV64 488 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 ATP11BQ9Y2G3 1177 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 GJB3O75712 270 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 STMN1P16949 149 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 CORO1AP31146 461 aaKnown RBP18.3■□□□□ 0.52
SMPD3-211ENST00000568373 AVPR1AP37288 418 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 NUMBP49757 651 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 TAF12Q16514 161 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 ALG1LQ6GMV1 187 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 ATG14Q6ZNE5 492 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 OR7D4Q8NG98 312 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 OR52K2Q8NGK3 314 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 GABPB2Q8TAK5 448 aaPredicted RBP18.3■□□□□ 0.52
SMPD3-211ENST00000568373 RDH11Q8TC12 318 aa18.3■□□□□ 0.52
SMPD3-211ENST00000568373 SREK1Q8WXA9 508 aaKnown RBP18.3■□□□□ 0.52
SMPD3-211ENST00000568373 HERC2P3Q9BVR0 1158 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms