RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 RCE1Q9Y256 329 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 PCDHAC2Q9Y5I4 1007 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 CLDN16Q9Y5I7 305 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 SCN5AQ14524 2016 aa3.02□□□□□ -1.93
VPS35-207ENST00000568191 hCG_1642624A0A1W2PR95 340 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 DYTNA2CJ06 578 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 TYW5A2RUC4 315 aaKnown RBP3.01□□□□□ -1.93
VPS35-207ENST00000568191 FAM90A20PA6NIJ5 464 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 DDNO94850 711 aaPredicted RBP3.01□□□□□ -1.93
VPS35-207ENST00000568191 GAS8-AS1O95177 125 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 SERPINC1P01008 464 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 IGLV2-11P01706 119 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 AMD1P17707 334 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 PNLIPRP1P54315 467 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 DLX5P56178 289 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 FAM27E3Q08E93 113 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 GALNT1Q10472 559 aaPredicted RBP3.01□□□□□ -1.93
VPS35-207ENST00000568191 TRAF3Q13114 568 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 ADCK5Q3MIX3 580 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 ACCSLQ4AC99 568 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 LCE1EQ5T753 118 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 TBC1D9BQ66K14 1250 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 FAM122CQ6P4D5 195 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 IL20RBQ6UXL0 311 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 UNQ6126/PRO20091Q6UXV3 157 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 GDPD4Q6W3E5 623 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 TRIM74Q86UV6 250 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 TRIM73Q86UV7 250 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 MB21D2Q8IYB1 491 aaPredicted RBP3.01□□□□□ -1.93
VPS35-207ENST00000568191 MAB21L3Q8N8X9 362 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 MCPH1Q8NEM0 835 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 HSPH1Q92598 858 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 RBM17Q96I25 401 aaKnown RBP3.01□□□□□ -1.93
VPS35-207ENST00000568191 IL25Q9H293 177 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 MVB12BQ9H7P6 319 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 TTC12Q9H892 705 aaPredicted RBP3.01□□□□□ -1.93
VPS35-207ENST00000568191 CHODLQ9H9P2 273 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 WDR6Q9NNW5 1121 aaKnown RBP3.01□□□□□ -1.93
VPS35-207ENST00000568191 PLCB1Q9NQ66 1216 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 G6PC2Q9NQR9 355 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 OR6C3Q9NZP0 311 aa3.01□□□□□ -1.93
VPS35-207ENST00000568191 ATXN2Q99700 1313 aaKnown RBP3□□□□□ -1.93
VPS35-207ENST00000568191 BMPR1BO00238 502 aa3□□□□□ -1.93
VPS35-207ENST00000568191 PCNAP12004 261 aa3□□□□□ -1.93
VPS35-207ENST00000568191 ANOS1P23352 680 aa3□□□□□ -1.93
VPS35-207ENST00000568191 DCTDP32321 178 aa3□□□□□ -1.93
VPS35-207ENST00000568191 IL15P40933 162 aaPredicted RBP3□□□□□ -1.93
VPS35-207ENST00000568191 MTNR1AP48039 350 aa3□□□□□ -1.93
VPS35-207ENST00000568191 CENPAP49450 140 aa3□□□□□ -1.93
VPS35-207ENST00000568191 HILS1P60008 231 aa3□□□□□ -1.93
VPS35-207ENST00000568191 TROAPQ12815 778 aa3□□□□□ -1.93
VPS35-207ENST00000568191 GRSF1Q12849 480 aaKnown RBP eCLIP3□□□□□ -1.93
VPS35-207ENST00000568191 DLG1Q12959 904 aa3□□□□□ -1.93
VPS35-207ENST00000568191 CAPSQ13938 189 aa3□□□□□ -1.93
VPS35-207ENST00000568191 TIGD6Q17RP2 521 aa3□□□□□ -1.93
VPS35-207ENST00000568191 EDRF1Q3B7T1 1238 aa3□□□□□ -1.93
VPS35-207ENST00000568191 CTXN3Q4LDR2 81 aa3□□□□□ -1.93
VPS35-207ENST00000568191 DENND1BQ6P3S1 775 aa3□□□□□ -1.93
VPS35-207ENST00000568191 GJB7Q6PEY0 223 aa3□□□□□ -1.93
VPS35-207ENST00000568191 RHBDF2Q6PJF5 856 aa3□□□□□ -1.93
VPS35-207ENST00000568191 CHD1LQ86WJ1 897 aa3□□□□□ -1.93
VPS35-207ENST00000568191 CCDC105Q8IYK2 499 aa3□□□□□ -1.93
VPS35-207ENST00000568191 NAGSQ8N159 534 aa3□□□□□ -1.93
VPS35-207ENST00000568191 TMEM57Q8N5G2 664 aa3□□□□□ -1.93
VPS35-207ENST00000568191 VPS37AQ8NEZ2 397 aa3□□□□□ -1.93
VPS35-207ENST00000568191 OR4N2Q8NGD1 307 aa3□□□□□ -1.93
VPS35-207ENST00000568191 STT3BQ8TCJ2 826 aa3□□□□□ -1.93
VPS35-207ENST00000568191 CD101Q93033 1021 aa3□□□□□ -1.93
VPS35-207ENST00000568191 WBP2Q969T9 261 aa3□□□□□ -1.93
VPS35-207ENST00000568191 MSTO1Q9BUK6 570 aa3□□□□□ -1.93
VPS35-207ENST00000568191 ANKRD10Q9NXR5 420 aa3□□□□□ -1.93
VPS35-207ENST00000568191 KIF17Q9P2E2 1029 aa3□□□□□ -1.93
VPS35-207ENST00000568191 DERAQ9Y315 318 aa3□□□□□ -1.93
VPS35-207ENST00000568191 SLC25A17O43808 307 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CYP21A2P08686 494 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 IGHV4-30-4P0DP06 118 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 ZNF8P17098 575 aaPredicted RBP2.99□□□□□ -1.93
VPS35-207ENST00000568191 CTPS1P17812 591 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CD58P19256 250 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 TCEA1P23193 301 aaKnown RBP2.99□□□□□ -1.93
VPS35-207ENST00000568191 DGKAP23743 735 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 ARSFP54793 590 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 BNC1Q01954 994 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 DDR1Q08345 913 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CCDC6Q16204 474 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 RPE65Q16518 533 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 TUBB8Q3ZCM7 444 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 ZNF484Q5JVG2 852 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CBWD5Q5RIA9 395 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 PMS2CLQ68D20 193 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 LIN54Q6MZP7 749 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CES5AQ6NT32 575 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 DCUN1D3Q8IWE4 304 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 SFTPA2Q8IWL1 248 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CACNA2D3Q8IZS8 1091 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 MUC20Q8N307 709 aaPredicted RBP2.99□□□□□ -1.93
VPS35-207ENST00000568191 AADATQ8N5Z0 425 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 SETD9Q8NE22 299 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 NEK9Q8TD19 979 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CSGALNACT1Q8TDX6 532 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms