RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 MFSD11O43934 449 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 SH3BP5O60239 455 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 GJB3O75712 270 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 IL1BP01584 269 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 FTH1P19P0C7X4 201 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 ZFXP17010 805 aaPredicted RBP17.53■□□□□ 0.4
CLN3-217ENST00000565354 CTNNA1P35221 906 aaKnown RBP17.53■□□□□ 0.4
CLN3-217ENST00000565354 PSMD8P48556 350 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 RHOAP61586 193 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 RPS14P62263 151 aaKnown RBP17.53■□□□□ 0.4
CLN3-217ENST00000565354 AFMIDQ63HM1 303 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 NCBP2-AS2Q69YL0 99 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 MFSD7Q6UXD7 560 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 CCNI2Q6ZMN8 369 aaPredicted RBP17.53■□□□□ 0.4
CLN3-217ENST00000565354 SLC41A1Q8IVJ1 513 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 KATNAL2Q8IYT4 538 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 RCOR2Q8IZ40 523 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 FAF2Q96CS3 445 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 TM6SF2Q9BZW4 377 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 KLC2Q9H0B6 622 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 RSPH9Q9H1X1 276 aaPredicted RBP17.53■□□□□ 0.4
CLN3-217ENST00000565354 CCDC86Q9H6F5 360 aaKnown RBP17.53■□□□□ 0.4
CLN3-217ENST00000565354 IPO11Q9UI26 975 aaKnown RBP17.53■□□□□ 0.4
CLN3-217ENST00000565354 CYP8B1Q9UNU6 501 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 NCKAP1Q9Y2A7 1128 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 PCDHB9Q9Y5E1 797 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 GOLGA4Q13439 2230 aaKnown RBP17.52■□□□□ 0.4
CLN3-217ENST00000565354 IGHV1OR15-9A0A0B4J2B8 117 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 J3KR12 359 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 ALOX15BO15296 676 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 PRAMEF11O60813 436 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 TMCC1O94876 653 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 FTCDO95954 541 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 ADH1BP00325 375 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 CTNNA2P26232 953 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 MARCKSL1P49006 195 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 RWDD2BP57060 319 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 SNRPD1P62314 119 aaKnown RBP17.52■□□□□ 0.4
CLN3-217ENST00000565354 DYNLT1P63172 113 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 ZBTB16Q05516 673 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 IL10RBQ08334 325 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 TFDP2Q14188 446 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 PAFAH1B3Q15102 231 aaKnown RBP17.52■□□□□ 0.4
CLN3-217ENST00000565354 CST6Q15828 149 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 INO80DQ53TQ3 878 aaPredicted RBP17.52■□□□□ 0.4
CLN3-217ENST00000565354 CARD16Q5EG05 197 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 FAM46CQ5VWP2 391 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 KAZNQ674X7 775 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 SPOCD1Q6ZMY3 1216 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 BBS5Q8N3I7 341 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 LRRC57Q8N9N7 239 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 EXD1Q8NHP7 514 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 KRT35Q92764 455 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 HSPA12BQ96MM6 686 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 CINPQ9BW66 212 aaPredicted RBP17.52■□□□□ 0.4
CLN3-217ENST00000565354 SCML1Q9UN30 329 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 PCDHA3Q9Y5H8 950 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 CAPN6Q9Y6Q1 641 aa17.52■□□□□ 0.4
CLN3-217ENST00000565354 CHD5Q8TDI0 1954 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 BPTFQ12830 3046 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 C3orf70A6NLC5 250 aaPredicted RBP17.51■□□□□ 0.39
CLN3-217ENST00000565354 MIF4GDA9UHW6 222 aaKnown RBP17.51■□□□□ 0.39
CLN3-217ENST00000565354 MCF2LO15068 1137 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 ZSCAN12O43309 604 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 NEBLO76041 1014 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 IGSF6O95976 241 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 MX2P20592 715 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 SLC8A1P32418 973 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 RAD51Q06609 339 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 TFDP3Q5H9I0 405 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 CCDC181Q5TID7 509 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 ARHGAP36Q6ZRI8 547 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 ZNF662Q6ZS27 426 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 NT5DC3Q86UY8 548 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 NAXDQ8IW45 347 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 TP53INP2Q8IXH6 220 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 PQLC3Q8N755 202 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 PNPLA1Q8N8W4 532 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 ISG20Q96AZ6 181 aaKnown RBP17.51■□□□□ 0.39
CLN3-217ENST00000565354 NYNRINQ9P2P1 1898 aaKnown RBP17.51■□□□□ 0.39
CLN3-217ENST00000565354 IL36AQ9UHA7 158 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 HEY1Q9Y5J3 304 aa17.51■□□□□ 0.39
CLN3-217ENST00000565354 KNL1Q8NG31 2342 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 MID1O15344 667 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 NDUFS2O75306 463 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 MAP3K6O95382 1288 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 CD160O95971 181 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 GSRP00390 522 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 PRNPP04156 253 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 OXTRP30559 389 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 CHRNA3P32297 505 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 CDKN2BP42772 138 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 ZNF235Q14590 738 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 RFTN1Q14699 578 aaPredicted RBP17.5■□□□□ 0.39
CLN3-217ENST00000565354 LLGL1Q15334 1064 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 TIGD7Q6NT04 549 aaPredicted RBP17.5■□□□□ 0.39
CLN3-217ENST00000565354 DPY19L3Q6ZPD9 716 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 FAM124AQ86V42 546 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 LRRC49Q8IUZ0 686 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 CCNYQ8ND76 341 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms