RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 KLK6Q92876 244 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 HAUS1Q96CS2 278 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 HES6Q96HZ4 224 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 KLHL32Q96NJ5 620 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 PSKH2Q96QS6 385 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 PPP1R9BQ96SB3 815 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 MGME1Q9BQP7 344 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 GORASP1Q9BQQ3 440 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 HEMGNQ9BXL5 484 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 BRD8Q9H0E9 1235 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 FBRSQ9HAH7 460 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 CAPN10Q9HC96 672 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 SEMA4GQ9NTN9 838 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 EIF2B4Q9UI10 523 aaKnown RBP9.34□□□□□ -0.91
VPS35-206ENST00000565228 GUCA1BQ9UMX6 200 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 R3HDM2Q9Y2K5 976 aaKnown RBP9.34□□□□□ -0.91
VPS35-206ENST00000565228 PPP2R2CQ9Y2T4 447 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.34□□□□□ -0.91
VPS35-206ENST00000565228 FADS3Q9Y5Q0 445 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 ARID1BQ8NFD5 2236 aaPredicted RBP9.33□□□□□ -0.92
VPS35-206ENST00000565228 CHD8Q9HCK8 2581 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 TSPAN11A1L157 253 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 FAM47DPA6NHR8 397 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 C16orf96A6NNT2 1141 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 KCNK1O00180 336 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 CDX4O14627 284 aaPredicted RBP9.33□□□□□ -0.92
VPS35-206ENST00000565228 AREL1O15033 823 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 RAD51BO15315 384 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 CST8O60676 142 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 KRT37O76014 449 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 ADH1BP00325 375 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 PRLP01236 227 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 ACADMP11310 421 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 ADRB3P13945 408 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 ITGB7P26010 798 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 MAT2AP31153 395 aaKnown RBP9.33□□□□□ -0.92
VPS35-206ENST00000565228 CD68P34810 354 aaPredicted RBP9.33□□□□□ -0.92
VPS35-206ENST00000565228 NNMTP40261 264 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 DSC2Q02487 901 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 PPIDQ08752 370 aaKnown RBP9.33□□□□□ -0.92
VPS35-206ENST00000565228 WASHC5Q12768 1159 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 KIF5AQ12840 1032 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 TPRG1LQ5T0D9 272 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 TMCO4Q5TGY1 634 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 LYSMD4Q5XG99 296 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 KIAA0895LQ68EN5 471 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 GDPD4Q6W3E5 623 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 ZNF662Q6ZS27 426 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 ERN2Q76MJ5 926 aaKnown RBP9.33□□□□□ -0.92
VPS35-206ENST00000565228 SRLQ86TD4 932 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 VSIG1Q86XK7 387 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 KIAA2013Q8IYS2 634 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 RYBPQ8N488 228 aaPredicted RBP9.33□□□□□ -0.92
VPS35-206ENST00000565228 ZCCHC9Q8N567 271 aaKnown RBP9.33□□□□□ -0.92
VPS35-206ENST00000565228 OR14C36Q8NHC7 312 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 EXD1Q8NHP7 514 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 KIAA1524Q8TCG1 905 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 HDAC11Q96DB2 347 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 ECHDC3Q96DC8 303 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 LOXL4Q96JB6 756 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 SPACA7Q96KW9 195 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 SLC6A18Q96N87 628 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 TSGA13Q96PP4 275 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 IL12RB2Q99665 862 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 OMDQ99983 421 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 HDAC8Q9BY41 377 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 BTBD1Q9H0C5 482 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 SP110Q9HB58 689 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 NOD2Q9HC29 1040 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 LZTFL1Q9NQ48 299 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 DDX56Q9NY93 547 aaKnown RBP9.33□□□□□ -0.92
VPS35-206ENST00000565228 LCMT1Q9UIC8 334 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 FZD4Q9ULV1 537 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 HPCAL4Q9UM19 191 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 ATP8A1Q9Y2Q0 1164 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 PCDHGC4Q9Y5F7 938 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 HEY1Q9Y5J3 304 aa9.33□□□□□ -0.92
VPS35-206ENST00000565228 TDRD6O60522 2096 aaKnown RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 A0A1W2PR77 199 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 LNP1A1A4G5 178 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 ZSCAN5CA6NGD5 496 aaPredicted RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 H0Y8X5 98 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 APOL1O14791 398 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 MATN3O15232 486 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 MAP3K13O43283 966 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 LATO43561 262 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 FZD6O60353 706 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 RHOBTB1O94844 696 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 FSBPO95073 299 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 ZRANB2O95218 330 aaKnown RBP eCLIP9.32□□□□□ -0.92
VPS35-206ENST00000565228 POP4O95707 220 aaKnown RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 PDHA1P08559 390 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 ZNF806P0C7X5 589 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 CCNCP24863 283 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 OXTRP30559 389 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 CSNK1DP48730 415 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 SCNN1BP51168 640 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 NAP1L1P55209 391 aaKnown RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 SNRPD1P62314 119 aaKnown RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 RALGDSQ12967 914 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms