RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ZBED6P86452 979 aa17.09■□□□□ 0.33
CLK3-210ENST00000563112 ACAP1Q15027 740 aa17.09■□□□□ 0.33
CLK3-210ENST00000563112 DCP2Q8IU60 420 aaKnown RBP17.09■□□□□ 0.33
CLK3-210ENST00000563112 GALNT15Q8N3T1 639 aa17.09■□□□□ 0.33
CLK3-210ENST00000563112 CNDP2Q96KP4 475 aaKnown RBP17.09■□□□□ 0.33
CLK3-210ENST00000563112 SNRNP25Q9BV90 132 aaKnown RBP17.09■□□□□ 0.33
CLK3-210ENST00000563112 CALN1Q9BXU9 219 aa17.09■□□□□ 0.33
CLK3-210ENST00000563112 KLC2Q9H0B6 622 aa17.09■□□□□ 0.33
CLK3-210ENST00000563112 FZD3Q9NPG1 666 aa17.09■□□□□ 0.33
CLK3-210ENST00000563112 LUC7L2Q9Y383 392 aaKnown RBP17.09■□□□□ 0.33
CLK3-210ENST00000563112 A6NNZ2 444 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 ENC1O14682 589 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 DKK1O94907 266 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 SERPING1P05155 500 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 XPAP23025 273 aaPredicted RBP17.08■□□□□ 0.32
CLK3-210ENST00000563112 PBX1P40424 430 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 GRM3Q14832 879 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 CA9Q16790 459 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 PPP6R3Q5H9R7 873 aaPredicted RBP17.08■□□□□ 0.32
CLK3-210ENST00000563112 TMPRSS7Q7RTY8 843 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 TTC7BQ86TV6 843 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 ARFGAP1Q8N6T3 406 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 OR13H1Q8NG92 308 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 CELF6Q96J87 481 aaKnown RBP17.08■□□□□ 0.32
CLK3-210ENST00000563112 KCTD15Q96SI1 283 aaPredicted RBP17.08■□□□□ 0.32
CLK3-210ENST00000563112 TRIM7Q9C029 511 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 LRRC19Q9H756 370 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 KLHL11Q9NVR0 708 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 CAPN11Q9UMQ6 739 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 MFHAS1Q9Y4C4 1052 aa17.08■□□□□ 0.32
CLK3-210ENST00000563112 FPGTO14772 594 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 PRAMEF11O60813 436 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 LRCH4O75427 683 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 CDK4P11802 303 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 ERCC2P18074 760 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 PCK1P35558 622 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 ABL2P42684 1182 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 CLDN2P57739 230 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 NFKBIBQ15653 356 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 ZSCAN23Q3MJ62 389 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 HS1BP3Q53T59 392 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 HGSNATQ68CP4 663 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 CCNI2Q6ZMN8 369 aaPredicted RBP17.07■□□□□ 0.32
CLK3-210ENST00000563112 GCNT7Q6ZNI0 430 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 Q6ZSR6 202 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 RFX8Q6ZV50 586 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 PTAR1Q7Z6K3 402 aaPredicted RBP17.07■□□□□ 0.32
CLK3-210ENST00000563112 ABI3BPQ7Z7G0 1075 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 ASB12Q8WXK4 309 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 ZCCHC14Q8WYQ9 949 aaKnown RBP17.07■□□□□ 0.32
CLK3-210ENST00000563112 PEBP4Q96S96 227 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 C1QTNF2Q9BXJ5 285 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 CPEB1Q9BZB8 566 aaKnown RBP17.07■□□□□ 0.32
CLK3-210ENST00000563112 SLC39A8Q9C0K1 460 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 ZWILCHQ9H900 591 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 IFNKQ9P0W0 207 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 DKK3Q9UBP4 350 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 IPO11Q9UI26 975 aaKnown RBP17.07■□□□□ 0.32
CLK3-210ENST00000563112 ZMIZ1Q9ULJ6 1067 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 PCDHGA1Q9Y5H4 931 aa17.07■□□□□ 0.32
CLK3-210ENST00000563112 GOLGA4Q13439 2230 aaKnown RBP17.06■□□□□ 0.32
CLK3-210ENST00000563112 COL5A1P20908 1838 aaPredicted RBP17.06■□□□□ 0.32
CLK3-210ENST00000563112 IGLON5A6NGN9 336 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 SDC3O75056 442 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 KRT37O76014 449 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 C1SP09871 688 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 ARL4AP40617 200 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 HCAR3P49019 387 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 PAPOLAP51003 745 aaKnown RBP17.06■□□□□ 0.32
CLK3-210ENST00000563112 SUOXP51687 545 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 PIGHQ14442 188 aaPredicted RBP17.06■□□□□ 0.32
CLK3-210ENST00000563112 CYTH1Q15438 398 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 BOLA3Q53S33 107 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 KYAT3Q6YP21 454 aaKnown RBP17.06■□□□□ 0.32
CLK3-210ENST00000563112 NETO2Q8NC67 525 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 IFT43Q96FT9 208 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 LENG8Q96PV6 779 aaPredicted RBP17.06■□□□□ 0.32
CLK3-210ENST00000563112 SP110Q9HB58 689 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 LHX3Q9UBR4 397 aa17.06■□□□□ 0.32
CLK3-210ENST00000563112 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.06■□□□□ 0.327e-7■■□□□ 13.7
CLK3-210ENST00000563112 H3BRJ5 948 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 J3KR12 359 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 DFFAO00273 331 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 RABIFP47224 123 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 FGL2Q14314 439 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 CFAP58Q5T655 872 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 LZTR1Q8N653 840 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 DENND6BQ8NEG7 585 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 HCAR2Q8TDS4 363 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 CXorf40AQ8TE69 158 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 EXOC2Q96KP1 924 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 BMFQ96LC9 184 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 C1QTNF7Q9BXJ2 289 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 PDFQ9HBH1 243 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 CWC15Q9P013 229 aaKnown RBP17.05■□□□□ 0.32
CLK3-210ENST00000563112 IP6K2Q9UHH9 426 aa17.05■□□□□ 0.32
CLK3-210ENST00000563112 ANKRD11Q6UB99 2663 aaPredicted RBP17.05■□□□□ 0.32
CLK3-210ENST00000563112 PTPRBP23467 1997 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 POM121BA6NF01 834 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 NEMP2A6NFY4 417 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms