RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 KPNA3O00505 521 aaPredicted RBP9.91□□□□□ -0.82
CLK3-208ENST00000562626 ALOX15BO15296 676 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 CEP104O60308 925 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 ALDH1A2O94788 518 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 TJP3O95049 919 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 IGSF6O95976 241 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 IGLV3-19P01714 112 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 FGGP02679 453 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 PRKCGP05129 697 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 RBP3P10745 1247 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 MX2P20592 715 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 ABL2P42684 1182 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 SCNN1BP51168 640 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 TRAF2Q12933 501 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 HNRNPDQ14103 355 aaKnown RBP9.91□□□□□ -0.82
CLK3-208ENST00000562626 ZNF235Q14590 738 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 RFTN1Q14699 578 aaPredicted RBP9.91□□□□□ -0.82
CLK3-208ENST00000562626 LPAL2Q16609 132 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 SLC45A4Q5BKX6 768 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 PIP5KL1Q5T9C9 394 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 MARC1Q5VT66 337 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 AGBL4Q5VU57 503 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 ALG1LQ6GMV1 187 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 NCEH1Q6PIU2 408 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 NYAP1Q6ZVC0 841 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 KBTBD6Q86V97 674 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 PLPP6Q8IY26 295 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 ZNF567Q8N184 647 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 RASGEF1CQ8N431 466 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 HDDC3Q8N4P3 179 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 GLIS1Q8NBF1 620 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 TMIEQ8NEW7 156 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 TFB1MQ8WVM0 346 aaKnown RBP9.91□□□□□ -0.82
CLK3-208ENST00000562626 GAB3Q8WWW8 586 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 FATE1Q969F0 183 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 KLHL32Q96NJ5 620 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 AGAP3Q96P47 875 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 SEMA3CQ99985 751 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 BRD8Q9H0E9 1235 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 NEUROG2Q9H2A3 272 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 USP29Q9HBJ7 922 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 WSB2Q9NYS7 404 aaPredicted RBP9.91□□□□□ -0.82
CLK3-208ENST00000562626 SNX12Q9UMY4 172 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 ITM2BQ9Y287 266 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 ZKSCAN5Q9Y2L8 839 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 CFAP54Q96N23 3096 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 OTOGLQ3ZCN5 2332 aa9.91□□□□□ -0.82
CLK3-208ENST00000562626 FRYLO94915 3013 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 CCDC163A0A0D9SF12 145 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 A0A0U1RQS6 177 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 H7C0C1 242 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 PDE2AO00408 941 aaPredicted RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 TRAFD1O14545 582 aaPredicted RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 PPP1R12AO14974 1030 aaPredicted RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 ZBTB24O43167 697 aaPredicted RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 GFRA3O60609 400 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 RNASEH2AO75792 299 aaKnown RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 RPP40O75818 363 aaKnown RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 POP4O95707 220 aaKnown RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 DNTTP04053 509 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 ETS1P14921 441 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 C5AR1P21730 350 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 RECQLP46063 649 aaPredicted RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 ATP5OP48047 213 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 CSNK1DP48730 415 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 PPP2CBP62714 309 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 PPP2CAP67775 309 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 XRCC4Q13426 336 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 SNX1Q13596 522 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 E2F5Q15329 346 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 OASLQ15646 514 aaKnown RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 CCDC181Q5TID7 509 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 TIGD7Q6NT04 549 aaPredicted RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 GDPD4Q6W3E5 623 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 METTL3Q86U44 580 aaKnown RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 PRPF39Q86UA1 669 aaKnown RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 LRRC49Q8IUZ0 686 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 SLC41A1Q8IVJ1 513 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 PRELID2Q8N945 189 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 SPATA22Q8NHS9 363 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 HTR3CQ8WXA8 447 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 TOE1Q96GM8 510 aaKnown RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 NUDCD1Q96RS6 583 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 GPR174Q9BXC1 333 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 DUSP15Q9H1R2 295 aaPredicted RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 C6orf106Q9H6K1 298 aaPredicted RBP9.9□□□□□ -0.82
CLK3-208ENST00000562626 FBRSQ9HAH7 460 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 FBXL12Q9NXK8 326 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 TTLL3Q9Y4R7 772 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 PCDHGC4Q9Y5F7 938 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 PCDHGA2Q9Y5H1 932 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 GPR179Q6PRD1 2367 aa9.9□□□□□ -0.82
CLK3-208ENST00000562626 WDR87Q6ZQQ6 2873 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 KNL1Q8NG31 2342 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 TSPAN11A1L157 253 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 BCLAF3A2AJT9 711 aaKnown RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 C16orf96A6NNT2 1141 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 KCNN4O15554 427 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms