RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 EPAS1Q99814 870 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 SYT11Q9BT88 431 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 TTYH3Q9C0H2 523 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 CATSPERBQ9H7T0 1116 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 PCSK1NQ9UHG2 260 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 GPSM3Q9Y4H4 160 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 TRPM6Q9BX84 2022 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 CXorf51AA0A1B0GTR3 108 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 LRRC53A6NM62 1247 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 WASH4PA8MWX3 477 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 J3KR12 359 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 FPGTO14772 594 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 SPINT1O43278 529 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 IGSF6O95976 241 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 FTLP02792 175 aaPredicted RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 GIMD1P0DJR0 217 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 CDK4P11802 303 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 SKILP12757 684 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 HOXB3P14651 431 aaPredicted RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 ACP1P24666 158 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 HNF1BP35680 557 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 YBEYP58557 167 aaPredicted RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 TPI1P60174 286 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 RAD51Q06609 339 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 PDE1CQ14123 709 aaPredicted RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 CA9Q16790 459 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 FILIP1LQ4L180 1135 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 HS1BP3Q53T59 392 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 INO80DQ53TQ3 878 aaPredicted RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 TPRG1LQ5T0D9 272 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 KYAT3Q6YP21 454 aaKnown RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 ZNF571Q7Z3V5 609 aaPredicted RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 DCP2Q8IU60 420 aaKnown RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 UMODL1-AS1Q8N2C9 162 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 ARFGAP1Q8N6T3 406 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 OR4C6Q8NH72 309 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 EXOC2Q96KP1 924 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 GDAP1L1Q96MZ0 367 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 LENG8Q96PV6 779 aaPredicted RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 OSBPL1AQ9BXW6 950 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 TRIM7Q9C029 511 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 DHX35Q9H5Z1 703 aaKnown RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 HAUS4Q9H6D7 363 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 PARVAQ9NVD7 372 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 KLF15Q9UIH9 416 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 AK5Q9Y6K8 562 aa10.36□□□□□ -0.75
LDLR-214ENST00000560628 TDRD6O60522 2096 aaKnown RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 URB1O60287 2271 aaKnown RBP10.36□□□□□ -0.75
LDLR-214ENST00000560628 TP53BP1Q12888 1972 aaPredicted RBP10.35□□□□□ -0.75
LDLR-214ENST00000560628 SPTY2D1-AS1A0A0U1RR47 76 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 TMEM191CA6NGB0 347 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 K7ESM1 405 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 EEF2KO00418 725 aaKnown RBP10.35□□□□□ -0.75
LDLR-214ENST00000560628 DDX3XO00571 662 aaKnown RBP eCLIP10.35□□□□□ -0.75
LDLR-214ENST00000560628 AREL1O15033 823 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 SCAMP1O15126 338 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 DAPK3O43293 454 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 PIGNO95427 931 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 DESP17661 470 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 RABIFP47224 123 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 ZNF165P49910 485 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 PAPOLAP51003 745 aaKnown RBP10.35□□□□□ -0.75
LDLR-214ENST00000560628 AIF1P55008 147 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 HNRNPKP61978 463 aaKnown RBP eCLIP10.35□□□□□ -0.75
LDLR-214ENST00000560628 INSM1Q01101 510 aaPredicted RBP10.35□□□□□ -0.75
LDLR-214ENST00000560628 SEMG2Q02383 582 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 ILKQ13418 452 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 PARP15Q460N3 678 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 E4F1Q66K89 784 aaPredicted RBP10.35□□□□□ -0.75
LDLR-214ENST00000560628 PLEKHA7Q6IQ23 1121 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 VPS36Q86VN1 386 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 FAM174AQ8TBP5 190 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 CASKIN2Q8WXE0 1202 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 CENPTQ96BT3 561 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 IFT43Q96FT9 208 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 VCPIP1Q96JH7 1222 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 APOLD1Q96LR9 279 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 DCBLD2Q96PD2 775 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 PEBP4Q96S96 227 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 NCAPGQ9BPX3 1015 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 BPIFA3Q9BQP9 254 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 WRAP53Q9BUR4 548 aaKnown RBP10.35□□□□□ -0.75
LDLR-214ENST00000560628 SLC39A8Q9C0K1 460 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 LRRC19Q9H756 370 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 MBNL1Q9NR56 388 aaKnown RBP10.35□□□□□ -0.75
LDLR-214ENST00000560628 MYO1AQ9UBC5 1043 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 LHX3Q9UBR4 397 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 UBA2Q9UBT2 640 aaPredicted RBP10.35□□□□□ -0.75
LDLR-214ENST00000560628 DKK4Q9UBT3 224 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 MYO6Q9UM54 1294 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 AP4E1Q9UPM8 1137 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 ASPMQ8IZT6 3477 aa10.35□□□□□ -0.75
LDLR-214ENST00000560628 COL5A1P20908 1838 aaPredicted RBP10.35□□□□□ -0.75
LDLR-214ENST00000560628 NEMP2A6NFY4 417 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 FGF10O15520 208 aaPredicted RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 BUB1BO60566 1050 aaPredicted RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 TM7SF2O76062 418 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 RNF8O76064 485 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 MT-CO3P00414 261 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 SERPINC1P01008 464 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms