RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 FUT11Q495W5 492 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 RABGAP1LQ5R372 815 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 FAXCQ5TGI0 409 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 RNF219Q5W0B1 726 aaPredicted RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 AFMIDQ63HM1 303 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 LRRC31Q6UY01 552 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 MICALCLQ6ZW33 695 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 ZNF572Q7Z3I7 529 aaPredicted RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 DDX42Q86XP3 938 aaKnown RBP eCLIP5.33□□□□□ -1.56
SPG11-220ENST00000559933 ZNF354CQ86Y25 554 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 PSTKQ8IV42 348 aaKnown RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 MFN1Q8IWA4 741 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 MAP7D3Q8IWC1 876 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 GSPT2Q8IYD1 628 aaKnown RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 FAM71DQ8N9W8 422 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 HJURPQ8NCD3 748 aaPredicted RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 SLC35B2Q8TB61 432 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 FBLIM1Q8WUP2 373 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 OSCP1Q8WVF1 389 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 SORCS1Q8WY21 1168 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 P3H4Q92791 437 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 MAGOHBQ96A72 148 aaKnown RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 C1orf74Q96LT6 269 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 OLFM3Q96PB7 478 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 QKIQ96PU8 341 aaKnown RBP eCLIP5.33□□□□□ -1.56
SPG11-220ENST00000559933 PSMG3-AS1Q96PY0 264 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 NCAPGQ9BPX3 1015 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 RHOXF2Q9BQY4 288 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 SPON2Q9BUD6 331 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 BBS2Q9BXC9 721 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 RBCK1Q9BYM8 510 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 TRIM31Q9BZY9 425 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 LRRC19Q9H756 370 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 TRPV4Q9HBA0 871 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 ZFP14Q9HCL3 533 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 SPHK2Q9NRA0 654 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 ABCB8Q9NUT2 735 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 TMEM248Q9NWD8 314 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 GDE1Q9NZC3 331 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 RCOR3Q9P2K3 495 aaPredicted RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 EPS15L1Q9UBC2 864 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 PPARGC1AQ9UBK2 798 aaKnown RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 AMACRQ9UHK6 382 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 SLC12A6Q9UHW9 1150 aa5.33□□□□□ -1.56
SPG11-220ENST00000559933 INTS6Q9UL03 887 aaKnown RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 TTC7AQ9ULT0 858 aaPredicted RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 MUC22E2RYF6 1773 aaPredicted RBP5.33□□□□□ -1.56
SPG11-220ENST00000559933 NUP205Q92621 2012 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 A0A1B0GVM2 712 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 CTAGE15A4D2H0 777 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 TCAF2A6NFQ2 919 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 WASH4PA8MWX3 477 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 KIAA1324LA8MWY0 1029 aaPredicted RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 ZNF487B1APH4 448 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 ANHXE9PGG2 379 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 H0Y626 953 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 K7ERQ8 282 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 CBX4O00257 560 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 ARNTLO00327 626 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 MCF2LO15068 1137 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 MUSKO15146 869 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 FGF10O15520 208 aaPredicted RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 KCNN4O15554 427 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 RAMP2O60895 175 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 LATS1O95835 1130 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 DLGAP3O95886 979 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 CD160O95971 181 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 PEX11BO96011 259 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 IFNB1P01574 187 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 CTAGE8P0CG41 777 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 RBP3P10745 1247 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 TCF3P15923 654 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 PFKLP17858 780 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 TGM2P21980 687 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 ITPKAP23677 461 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 HLA-FP30511 346 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 COILP38432 576 aaPredicted RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 GARSP41250 739 aaKnown RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 PAFAH1B1P43034 410 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 STK19P49842 368 aaPredicted RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 CDH4P55283 916 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 GNA12Q03113 381 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 GAD2Q05329 585 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 GALNT2Q10471 571 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 AP1B1Q10567 949 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 ZNF177Q13360 481 aaPredicted RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 OLIG2Q13516 323 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 CDH18Q13634 790 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 TFDP2Q14188 446 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 MAP7Q14244 749 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 POLD3Q15054 466 aaPredicted RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 PAFAH1B3Q15102 231 aaKnown RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 PRKD1Q15139 912 aaPredicted RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 OASLQ15646 514 aaKnown RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 SMAD2Q15796 467 aaKnown RBP5.32□□□□□ -1.56
SPG11-220ENST00000559933 CPSF6Q16630 551 aaKnown RBP eCLIP5.32□□□□□ -1.56
SPG11-220ENST00000559933 GEN1Q17RS7 908 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 LEXMQ3ZCV2 418 aa5.32□□□□□ -1.56
SPG11-220ENST00000559933 C5orf22Q49AR2 442 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms