RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 HOXB2P14652 356 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 CR2P20023 1033 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 CES1P23141 567 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 GKP32189 559 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 FDFT1P37268 417 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 ADCY8P40145 1251 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 CD86P42081 329 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 CSNK1DP48730 415 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 CCNHP51946 323 aaPredicted RBP9.73□□□□□ -0.85
CUX1-216ENST00000558469 BASP1P80723 227 aaKnown RBP9.73□□□□□ -0.85
CUX1-216ENST00000558469 SLC7A5Q01650 507 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 RAD51Q06609 339 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 ENPP2Q13822 863 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 PRPSAP1Q14558 356 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 GLE1Q53GS7 698 aaKnown RBP9.73□□□□□ -0.85
CUX1-216ENST00000558469 TEX35Q5T0J7 233 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 SYCP2LQ5T4T6 812 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 C9orf64Q5T6V5 341 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 ALG1LQ6GMV1 187 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 CCDC70Q6NSX1 233 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 DPY19L3Q6ZPD9 716 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 Q6ZS52 159 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 TRIM67Q6ZTA4 783 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 PLPP6Q8IY26 295 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 STK40Q8N2I9 435 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 SYNPOQ8N3V7 929 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 CHST14Q8NCH0 376 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 FLCNQ8NFG4 579 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 PJA1Q8NG27 643 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 ARRDC2Q8TBH0 407 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 CCHCR1Q8TD31 782 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 IMP4Q96G21 291 aaKnown RBP9.73□□□□□ -0.85
CUX1-216ENST00000558469 NSMCE3Q96MG7 304 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 FCRL5Q96RD9 977 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 GABRG3Q99928 467 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 GORASP1Q9BQQ3 440 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 HEPHQ9BQS7 1158 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 TRIM31Q9BZY9 425 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 ZDHHC6Q9H6R6 413 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 ETNK1Q9HBU6 452 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 PRSS16Q9NQE7 514 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 RAB6BQ9NRW1 208 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 UTP11Q9Y3A2 253 aaKnown RBP9.73□□□□□ -0.85
CUX1-216ENST00000558469 SIT1Q9Y3P8 196 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 LRRK1Q38SD2 2015 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 EFCAB8A8MWE9 144 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 E7EVH7 732 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 PMPCBO75439 489 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 ANXA9O76027 345 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 HEXIM1O94992 359 aaKnown RBP9.72□□□□□ -0.85
CUX1-216ENST00000558469 PIGNO95427 931 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 PDGFBP01127 241 aaPredicted RBP9.72□□□□□ -0.85
CUX1-216ENST00000558469 SERPINF2P08697 491 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 RHOXF2BP0C7M4 288 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 ALADP13716 330 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 MAPK8P45983 427 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 LMAN1P49257 510 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 GEMP55040 296 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 AP1S1P61966 158 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 SKOR1P84550 965 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 CAMK2GQ13555 558 aaPredicted RBP9.72□□□□□ -0.85
CUX1-216ENST00000558469 IHHQ14623 411 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 STARD3Q14849 445 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 PCSK7Q16549 785 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 HSF5Q4G112 596 aaPredicted RBP9.72□□□□□ -0.85
CUX1-216ENST00000558469 RALGPS1Q5JS13 557 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 EOGTQ5NDL2 527 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 PKN3Q6P5Z2 889 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 NCEH1Q6PIU2 408 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 KDELC2Q7Z4H8 507 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 PRPF39Q86UA1 669 aaKnown RBP9.72□□□□□ -0.85
CUX1-216ENST00000558469 GRIN3AQ8TCU5 1115 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 OR8D1Q8WZ84 308 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 LRRC45Q96CN5 670 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 OXNAD1Q96HP4 312 aaPredicted RBP9.72□□□□□ -0.85
CUX1-216ENST00000558469 RHOXF2Q9BQY4 288 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 ERP44Q9BS26 406 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 CPEB1Q9BZB8 566 aaKnown RBP9.72□□□□□ -0.85
CUX1-216ENST00000558469 OSBPL6Q9BZF3 934 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 RAB17Q9H0T7 212 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 DPH5Q9H2P9 285 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 ATP13A3Q9H7F0 1226 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 POLR3BQ9NW08 1133 aaPredicted RBP9.72□□□□□ -0.85
CUX1-216ENST00000558469 IL36AQ9UHA7 158 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 MMP17Q9ULZ9 603 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 AAR2Q9Y312 384 aaKnown RBP9.72□□□□□ -0.85
CUX1-216ENST00000558469 SNX24Q9Y343 169 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 PCDHGC4Q9Y5F7 938 aa9.72□□□□□ -0.85
CUX1-216ENST00000558469 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.71□□□□□ -0.86
CUX1-216ENST00000558469 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.71□□□□□ -0.86
CUX1-216ENST00000558469 A0A1W2PQF6 199 aa9.71□□□□□ -0.86
CUX1-216ENST00000558469 GOLGA6CA6NDK9 693 aa9.71□□□□□ -0.86
CUX1-216ENST00000558469 GOLGA6BA6NDN3 693 aa9.71□□□□□ -0.86
CUX1-216ENST00000558469 TMEM221A6NGB7 291 aa9.71□□□□□ -0.86
CUX1-216ENST00000558469 CHURC1-FNTBB4DL54 471 aa9.71□□□□□ -0.86
CUX1-216ENST00000558469 M0R296 226 aa9.71□□□□□ -0.86
CUX1-216ENST00000558469 ALOX15BO15296 676 aa9.71□□□□□ -0.86
CUX1-216ENST00000558469 PSMD3O43242 534 aa9.71□□□□□ -0.86
CUX1-216ENST00000558469 ATG13O75143 517 aa9.71□□□□□ -0.86
CUX1-216ENST00000558469 LEFTY1O75610 366 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms