RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 KPNA1P52294 538 aaPredicted RBP11.01□□□□□ -0.65
USP3-206ENST00000558157 TRIM25Q14258 630 aaKnown RBP11.01□□□□□ -0.65
USP3-206ENST00000558157 ZNF618Q5T7W0 954 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 MROH9Q5TGP6 573 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 TTC23LQ6PF05 361 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 MPZL3Q6UWV2 235 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 AGMOQ6ZNB7 445 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 CAMK1DQ8IU85 385 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 LSM14AQ8ND56 463 aaKnown RBP11.01□□□□□ -0.65
USP3-206ENST00000558157 CALML6Q8TD86 181 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 S100ZQ8WXG8 99 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 WNT8BQ93098 351 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 PBXIP1Q96AQ6 731 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 PTPRHQ9HD43 1115 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 TOPORSQ9NS56 1045 aaPredicted RBP11.01□□□□□ -0.65
USP3-206ENST00000558157 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.01□□□□□ -0.651e-6■■■■■ 35.6
USP3-206ENST00000558157 ATP11BQ9Y2G3 1177 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 KMOO15229 486 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 PAPSS1O43252 624 aaPredicted RBP11.01□□□□□ -0.65
USP3-206ENST00000558157 KLHL41O60662 606 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 JUNBP17275 347 aaPredicted RBP11.01□□□□□ -0.65
USP3-206ENST00000558157 TNFSF9P41273 254 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 WNT7BP56706 349 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 ROR1Q01973 937 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 TRAF2Q12933 501 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 SLX4IPQ5VYV7 408 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 TAF2Q6P1X5 1199 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 GALNT18Q6P9A2 607 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 C15orf39Q6ZRI6 1047 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 TMEM26Q6ZUK4 368 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 C10orf107Q8IVU9 208 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 LILRB4Q8NHJ6 448 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 ATP6V1E2Q96A05 226 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 NRBF2Q96F24 287 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 FEM1CQ96JP0 617 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 CDT1Q9H211 546 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 SMYD2Q9NRG4 433 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 NXF1Q9UBU9 619 aaKnown RBP11.01□□□□□ -0.65
USP3-206ENST00000558157 PSME2Q9UL46 239 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 TNFSF13BQ9Y275 285 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 DNAH12Q6ZR08 3092 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 C1orf232A0A0U1RR37 186 aa11□□□□□ -0.65
USP3-206ENST00000558157 TCRBV3S1A0A5B6 114 aa11□□□□□ -0.65
USP3-206ENST00000558157 MOXD2PA6NHM9 499 aa11□□□□□ -0.65
USP3-206ENST00000558157 CABYRO75952 493 aa11□□□□□ -0.65
USP3-206ENST00000558157 NTRK1P04629 796 aa11□□□□□ -0.65
USP3-206ENST00000558157 DARSP14868 501 aaKnown RBP11□□□□□ -0.65
USP3-206ENST00000558157 ARF4P18085 180 aaPredicted RBP11□□□□□ -0.65
USP3-206ENST00000558157 ACO1P21399 889 aaKnown RBP11□□□□□ -0.65
USP3-206ENST00000558157 KCNA4P22459 653 aa11□□□□□ -0.65
USP3-206ENST00000558157 KDELR1P24390 212 aa11□□□□□ -0.65
USP3-206ENST00000558157 HOXD11P31277 338 aaPredicted RBP11□□□□□ -0.65
USP3-206ENST00000558157 SERPINB5P36952 375 aa11□□□□□ -0.65
USP3-206ENST00000558157 CDC42EP1Q00587 391 aa11□□□□□ -0.65
USP3-206ENST00000558157 OCA2Q04671 838 aa11□□□□□ -0.65
USP3-206ENST00000558157 CD300CQ08708 224 aa11□□□□□ -0.65
USP3-206ENST00000558157 VWA5B1Q5TIE3 1220 aa11□□□□□ -0.65
USP3-206ENST00000558157 OR13F1Q8NGS4 319 aa11□□□□□ -0.65
USP3-206ENST00000558157 FNIP1Q8TF40 1166 aa11□□□□□ -0.65
USP3-206ENST00000558157 TMEM40Q8WWA1 233 aa11□□□□□ -0.65
USP3-206ENST00000558157 LRTOMTQ8WZ04 291 aa11□□□□□ -0.65
USP3-206ENST00000558157 RCN3Q96D15 328 aa11□□□□□ -0.65
USP3-206ENST00000558157 RTP4Q96DX8 246 aa11□□□□□ -0.65
USP3-206ENST00000558157 FAM84AQ96KN4 292 aa11□□□□□ -0.65
USP3-206ENST00000558157 MCEEQ96PE7 176 aa11□□□□□ -0.65
USP3-206ENST00000558157 TCF12Q99081 682 aa11□□□□□ -0.65
USP3-206ENST00000558157 TSEN34Q9BSV6 310 aaKnown RBP11□□□□□ -0.65
USP3-206ENST00000558157 ZNF518BQ9C0D4 1074 aa11□□□□□ -0.65
USP3-206ENST00000558157 ZNF385DQ9H6B1 395 aa11□□□□□ -0.65
USP3-206ENST00000558157 NANOGQ9H9S0 305 aa11□□□□□ -0.65
USP3-206ENST00000558157 POLR1BQ9H9Y6 1135 aa11□□□□□ -0.65
USP3-206ENST00000558157 PLAC1Q9HBJ0 212 aa11□□□□□ -0.65
USP3-206ENST00000558157 RBAKQ9NYW8 714 aaPredicted RBP11□□□□□ -0.65
USP3-206ENST00000558157 PCDHGC3Q9UN70 934 aa11□□□□□ -0.65
USP3-206ENST00000558157 A0A1W2PQ45 241 aaPredicted RBP11□□□□□ -0.65
USP3-206ENST00000558157 A0A1W2PQY0 241 aa11□□□□□ -0.65
USP3-206ENST00000558157 C9IYK1 514 aa11□□□□□ -0.65
USP3-206ENST00000558157 M0QX08 132 aa11□□□□□ -0.65
USP3-206ENST00000558157 OGTO15294 1046 aa11□□□□□ -0.65
USP3-206ENST00000558157 ZNF182P17025 639 aaPredicted RBP11□□□□□ -0.65
USP3-206ENST00000558157 MAGEA3P43357 314 aa11□□□□□ -0.65
USP3-206ENST00000558157 PKNOX1P55347 436 aa11□□□□□ -0.65
USP3-206ENST00000558157 DYNLT1P63172 113 aa11□□□□□ -0.65
USP3-206ENST00000558157 SLC25A11Q02978 314 aaKnown RBP11□□□□□ -0.65
USP3-206ENST00000558157 MTM1Q13496 603 aa11□□□□□ -0.65
USP3-206ENST00000558157 E2F2Q14209 437 aa11□□□□□ -0.65
USP3-206ENST00000558157 PTK2BQ14289 1009 aa11□□□□□ -0.65
USP3-206ENST00000558157 SLC9B1Q4ZJI4 515 aa11□□□□□ -0.65
USP3-206ENST00000558157 TXNRD3NBQ6F5E7 133 aa11□□□□□ -0.65
USP3-206ENST00000558157 DARS2Q6PI48 645 aaKnown RBP11□□□□□ -0.65
USP3-206ENST00000558157 ABRAXAS1Q6UWZ7 409 aa11□□□□□ -0.65
USP3-206ENST00000558157 UNC5AQ6ZN44 842 aa11□□□□□ -0.65
USP3-206ENST00000558157 VASH1Q7L8A9 365 aaPredicted RBP11□□□□□ -0.65
USP3-206ENST00000558157 SERINC5Q86VE9 423 aa11□□□□□ -0.65
USP3-206ENST00000558157 UNC5BQ8IZJ1 945 aa11□□□□□ -0.65
USP3-206ENST00000558157 TMCO5AQ8N6Q1 288 aa11□□□□□ -0.65
USP3-206ENST00000558157 SNX31Q8N9S9 440 aa11□□□□□ -0.65
USP3-206ENST00000558157 OR7G1Q8NGA0 311 aa11□□□□□ -0.65
USP3-206ENST00000558157 DEPDC1BQ8WUY9 529 aa11□□□□□ -0.65
USP3-206ENST00000558157 YME1L1Q96TA2 773 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms