RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 NCEH1Q6PIU2 408 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 GDPD4Q6W3E5 623 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 ZNF662Q6ZS27 426 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 SRLQ86TD4 932 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 SYT12Q8IV01 421 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 RGL4Q8IZJ4 473 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 CCNYQ8ND76 341 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 SNX19Q92543 992 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 HDAC11Q96DB2 347 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 CPEB1Q9BZB8 566 aaKnown RBP13.77□□□□□ -0.21
SHMT2-228ENST00000557302 KDM4CQ9H3R0 1056 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 LZTFL1Q9NQ48 299 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 PPP2R2CQ9Y2T4 447 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 ATXN2Q99700 1313 aaKnown RBP13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3DA0A087WVF3 549 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3IA0A087WXS9 549 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3EA0A087X179 549 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3KA0A087X1G2 549 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3FA6NER0 549 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3LB9A6J9 549 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 PPP1R12AO14974 1030 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-228ENST00000557302 MUSKO15146 869 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 MATN3O15232 486 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 INSIG1O15503 277 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3HP0C7X1 549 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TGM2P21980 687 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 HOXD12P35452 270 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 MAPK8P45983 427 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 RGRP47804 291 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 NR2C2P49116 596 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 PEX5P50542 639 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 AP1S1P61966 158 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 HNRNPDQ14103 355 aaKnown RBP13.76□□□□□ -0.21
SHMT2-228ENST00000557302 PDK1Q15118 436 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 CCDC6Q16204 474 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 CSRP2Q16527 193 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 KIAA0895LQ68EN5 471 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3GQ6DHY5 549 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3CQ6IPX1 549 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 FBXL19Q6PCT2 694 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 NPNTQ6UXI9 565 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 BZW1Q7L1Q6 419 aaKnown RBP13.76□□□□□ -0.21
SHMT2-228ENST00000557302 PARS2Q7L3T8 475 aaKnown RBP13.76□□□□□ -0.21
SHMT2-228ENST00000557302 CCDC13Q8IYE1 715 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TBC1D3Q8IZP1 549 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-228ENST00000557302 GPR161Q8N6U8 529 aaKnown RBP13.76□□□□□ -0.21
SHMT2-228ENST00000557302 MAML1Q92585 1016 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 FATE1Q969F0 183 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 VOPP1Q96AW1 172 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 KLHL32Q96NJ5 620 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 ALS2CR12Q96Q35 445 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 TUBGCP5Q96RT8 1024 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 ATP13A3Q9H7F0 1226 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 VPS45Q9NRW7 570 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 SEMA4GQ9NTN9 838 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 PILRBQ9UKJ0 227 aa13.76□□□□□ -0.21
SHMT2-228ENST00000557302 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-228ENST00000557302 C16orf96A6NNT2 1141 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 NEBLO76041 1014 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 PIGNO95427 931 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 ZNF806P0C7X5 589 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 ADRB3P13945 408 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 GNSP15586 552 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 MAOBP27338 520 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 PTPN7P35236 360 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 SCNN1BP51168 640 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 CCR5P51681 352 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 PPIDQ08752 370 aaKnown RBP13.75□□□□□ -0.21
SHMT2-228ENST00000557302 PLA2G2CQ5R387 149 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 CFAP58Q5T655 872 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 CCDC181Q5TID7 509 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 PEAR1Q5VY43 1037 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-228ENST00000557302 BBS12Q6ZW61 710 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 RABEPKQ7Z6M1 372 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 TEX26Q8N6G2 289 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 LRRN4Q8WUT4 740 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 UBE2Q2Q8WVN8 375 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 DNASE2BQ8WZ79 361 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 ALG3Q92685 438 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 BIRC7Q96CA5 298 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 ZNF641Q96N77 438 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-228ENST00000557302 OLFM3Q96PB7 478 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 LGMNQ99538 433 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 MGME1Q9BQP7 344 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 HEMGNQ9BXL5 484 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 OSBPL8Q9BZF1 889 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 BRD8Q9H0E9 1235 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 MIR1-1HGQ9H1L0 117 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 PREBQ9HCU5 417 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 PARD6AQ9NPB6 346 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 TMEM74BQ9NUR3 256 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 HAUS2Q9NVX0 235 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 DKK3Q9UBP4 350 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 SUSD2Q9UGT4 822 aa13.75□□□□□ -0.21
SHMT2-228ENST00000557302 TPX2Q9ULW0 747 aaKnown RBP13.75□□□□□ -0.21
SHMT2-228ENST00000557302 PACSIN2Q9UNF0 486 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-228ENST00000557302 DDX3YO15523 660 aaKnown RBP13.74□□□□□ -0.21
SHMT2-228ENST00000557302 FOXD2O60548 495 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-228ENST00000557302 IGHV4-34P06331 123 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 CCNB1P14635 433 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms