RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 CCDC185Q8N715 623 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 DIS3LQ8TF46 1054 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 MZB1Q8WU39 189 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 KCTD4Q8WVF5 259 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 TRIB2Q92519 343 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 NDRG1Q92597 394 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PLAC1Q9HBJ0 212 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 DDX28Q9NUL7 540 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SLC39A1Q9NY26 324 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 COQ3Q9NZJ6 369 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 RABGEF1Q9UJ41 708 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 RBMX2Q9Y388 322 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PCDHGB5Q9Y5G0 923 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 EXOC1LA0A1B0GW35 172 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 C16orf96A6NNT2 1141 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 MATN2O00339 956 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 MCF2LO15068 1137 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SLC7A4O43246 635 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 MAP3K13O43283 966 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 BRINP1O60477 761 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 HSPA4LO95757 839 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 CHRNA1P02708 482 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 DNTTP04053 509 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SLC10A3P09131 477 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 AKR1A1P14550 325 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 BRAFP15056 766 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 VARSP26640 1264 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PPARGP37231 505 aaPredicted RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 WDR4P57081 412 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SMARCB1Q12824 385 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PPP2R5DQ14738 602 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PDK2Q15119 407 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SMU1Q2TAY7 513 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 EFHC2Q5JST6 749 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PRPF38BQ5VTL8 546 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 RAB12Q6IQ22 244 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 GDF6Q6KF10 455 aaPredicted RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 FAM122CQ6P4D5 195 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 CENPUQ71F23 418 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 ADGRF2Q8IZF7 708 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 B3GALNT2Q8NCR0 500 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SOCS4Q8WXH5 440 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 P3H4Q92791 437 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 ZNF560Q96MR9 790 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 ZNF670Q9BS34 389 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 DHRS4Q9BTZ2 278 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 ACAT2Q9BWD1 397 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 WNT5BQ9H1J7 359 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 TRIM45Q9H8W5 580 aaPredicted RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 NOD2Q9HC29 1040 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 HAUS2Q9NVX0 235 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 DLGAP2Q9P1A6 1054 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 NFKBIL1Q9UBC1 381 aaPredicted RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 CRNNQ9UBG3 495 aaPredicted RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 MFHAS1Q9Y4C4 1052 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 ACTL7BQ9Y614 415 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 MYO16Q9Y6X6 1858 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 FAM47E-STBD1D6RA91 191 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 STX16-NPEPL1H3BU86 382 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 H7C0C1 242 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 I6L893 689 aaPredicted RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 CLDN5O00501 218 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SYNCRIPO60506 623 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 DUSP11O75319 330 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PIGNO95427 931 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 AMHP03971 560 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 LCP1P13796 627 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 STMN1P16949 149 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 WARSP23381 471 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 MAPK1P28482 360 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SERPINB3P29508 390 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PNPLA4P41247 253 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 ALDH18A1P54886 795 aaKnown RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 TMED2Q15363 201 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 TLR1Q15399 786 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 FBXO43Q4G163 708 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 FCRLBQ6BAA4 426 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 ALG1LQ6GMV1 187 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 CGB2Q6NT52 195 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SCYL2Q6P3W7 929 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 CXCL17Q6UXB2 119 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 CLEC20AQ6ZU45 233 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 KDELC2Q7Z4H8 507 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PIGZQ86VD9 579 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 RIBC1Q8N443 379 aaPredicted RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 TOP6BLQ8N6T0 577 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 STKLD1Q8NE28 680 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PIK3C3Q8NEB9 887 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 DENND1AQ8TEH3 1009 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 ATL1Q8WXF7 558 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 NT5C3BQ969T7 300 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 TRAPPC9Q96Q05 1148 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 VPS35Q96QK1 796 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 C19orf43Q9BQ61 176 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 PAAF1Q9BRP4 392 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SENP6Q9GZR1 1112 aaPredicted RBP5.16□□□□□ -1.58
TMEM260-210ENST00000556422 SP140LQ9H930 580 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 BRD7Q9NPI1 651 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 TMPRSS4Q9NRS4 437 aa5.16□□□□□ -1.58
TMEM260-210ENST00000556422 MIOSQ9NXC5 875 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms