RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 TBL1YQ9BQ87 522 aa11.34□□□□□ -0.59
SHMT2-220ENST00000555634 TNKS2Q9H2K2 1166 aa11.34□□□□□ -0.59
SHMT2-220ENST00000555634 MFSD1Q9H3U5 465 aa11.34□□□□□ -0.59
SHMT2-220ENST00000555634 ETNK1Q9HBU6 452 aa11.34□□□□□ -0.59
SHMT2-220ENST00000555634 HECAQ9UBI9 543 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-220ENST00000555634 LHX3Q9UBR4 397 aa11.34□□□□□ -0.59
SHMT2-220ENST00000555634 IL36AQ9UHA7 158 aa11.34□□□□□ -0.59
SHMT2-220ENST00000555634 NDRG2Q9UN36 371 aaKnown RBP11.34□□□□□ -0.59
SHMT2-220ENST00000555634 STARD13Q9Y3M8 1113 aa11.34□□□□□ -0.59
SHMT2-220ENST00000555634 UQCRHLA0A096LP55 91 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 ESYT3A0FGR9 886 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 PRRT4C9JH25 899 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 F5H423 210 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-220ENST00000555634 TRIM24O15164 1050 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 CPP00450 1065 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 FGF1P05230 155 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 UQCRHP07919 91 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 HNRNPLP14866 589 aaKnown RBP eCLIP11.33□□□□□ -0.6
SHMT2-220ENST00000555634 HLA-DPA1P20036 260 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 NTSR1P30989 418 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 PLTPP55058 493 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 POLR2LP62875 67 aaKnown RBP11.33□□□□□ -0.6
SHMT2-220ENST00000555634 MRPS25P82663 173 aaKnown RBP11.33□□□□□ -0.6
SHMT2-220ENST00000555634 CDH17Q12864 832 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 UBXN2BQ14CS0 331 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 CYTH1Q15438 398 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 HNRNPA1L2Q32P51 320 aaKnown RBP11.33□□□□□ -0.6
SHMT2-220ENST00000555634 ATXN7L2Q5T6C5 722 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-220ENST00000555634 ARMC12Q5T9G4 340 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 FAM46CQ5VWP2 391 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 WDR93Q6P2C0 686 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 CCDC25Q86WR0 208 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 GJD3Q8N144 294 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 SIX5Q8N196 739 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 SYNPOQ8N3V7 929 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 PDCD7Q8N8D1 485 aaKnown RBP11.33□□□□□ -0.6
SHMT2-220ENST00000555634 GLIS1Q8NBF1 620 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 GRIN3AQ8TCU5 1115 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 SORCS1Q8WY21 1168 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 FEM1CQ96JP0 617 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 SRPK1Q96SB4 655 aaKnown RBP11.33□□□□□ -0.6
SHMT2-220ENST00000555634 HEPHQ9BQS7 1158 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 FICDQ9BVA6 458 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 PHACTR1Q9C0D0 580 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 THAP10Q9P2Z0 257 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-220ENST00000555634 NEU2Q9Y3R4 380 aa11.33□□□□□ -0.6
SHMT2-220ENST00000555634 ZNF106Q9H2Y7 1883 aaKnown RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 K7ERQ8 282 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 PPFIA2O75334 1257 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 METTL18O95568 372 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 MT-CO1P00395 513 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 MLNP12872 115 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 HOXB2P14652 356 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 TIE1P35590 1138 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 MAGEA6P43360 314 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 GRIA4P48058 902 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 WNT3AP56704 352 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 RPL26P61254 145 aaKnown RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 KCNJ11Q14654 390 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 SLMAPQ14BN4 828 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 PTPRNQ16849 979 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 TTC31Q49AM3 519 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 C2orf27AQ580R0 203 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 RNASEH2BQ5TBB1 312 aaKnown RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 ARMC3Q5W041 872 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 EGFLAMQ63HQ2 1017 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 TMEM215Q68D42 235 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 HIBCHQ6NVY1 386 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 CASC4Q6P4E1 433 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 USP45Q70EL2 814 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 PRUNE1Q86TP1 453 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 ZCCHC9Q8N567 271 aaKnown RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 CNTD1Q8N815 330 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 MCUQ8NE86 351 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 PPHLN1Q8NEY8 458 aaKnown RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 GABPB2Q8TAK5 448 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 SEC14L1Q92503 715 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 CPT1BQ92523 772 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 PRCCQ92733 491 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 RMDN1Q96DB5 314 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 ZNF641Q96N77 438 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 CPEB1Q9BZB8 566 aaKnown RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 ANKZF1Q9H8Y5 726 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 NOD2Q9HC29 1040 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 GDF3Q9NR23 364 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 CACNA2D2Q9NY47 1150 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 UBP1Q9NZI7 540 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 BFARQ9NZS9 450 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 EVLQ9UI08 416 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 DMGDHQ9UI17 866 aaKnown RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 RPL26L1Q9UNX3 145 aaKnown RBP11.32□□□□□ -0.6
SHMT2-220ENST00000555634 STON1Q9Y6Q2 735 aa11.32□□□□□ -0.6
SHMT2-220ENST00000555634 SPTBN5Q9NRC6 3674 aaKnown RBP11.31□□□□□ -0.6
SHMT2-220ENST00000555634 KANSL1LA0AUZ9 987 aa11.31□□□□□ -0.6
SHMT2-220ENST00000555634 TTC34A8MYJ7 566 aa11.31□□□□□ -0.6
SHMT2-220ENST00000555634 GOLGA8MH3BSY2 632 aa11.31□□□□□ -0.6
SHMT2-220ENST00000555634 EIF3HO15372 352 aaKnown RBP eCLIP11.31□□□□□ -0.6
SHMT2-220ENST00000555634 CTIFO43310 598 aaKnown RBP11.31□□□□□ -0.6
SHMT2-220ENST00000555634 SMAD6O43541 496 aaKnown RBP11.31□□□□□ -0.6
SHMT2-220ENST00000555634 RNF40O75150 1001 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms