RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 CLEC16AQ2KHT3 1053 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 ALFQ53S48 1182 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 PIP5KL1Q5T9C9 394 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 ATG14Q6ZNE5 492 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 Q6ZVU0 165 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 EFL1Q7Z2Z2 1120 aaKnown RBP12.04□□□□□ -0.48
SRP54-203ENST00000553544 ABI3BPQ7Z7G0 1075 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 PHF13Q86YI8 300 aaPredicted RBP12.04□□□□□ -0.48
SRP54-203ENST00000553544 EXD3Q8N9H8 876 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 JOSD2Q8TAC2 188 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 CCDC114Q96M63 670 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 HAPLN3Q96S86 360 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 C11orf70Q9BRQ4 267 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 SYT11Q9BT88 431 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 FZD3Q9NPG1 666 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 METTL5Q9NRN9 209 aaKnown RBP12.04□□□□□ -0.48
SRP54-203ENST00000553544 WDR70Q9NW82 654 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 ZNF212Q9UDV6 495 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 IPO11Q9UI26 975 aaKnown RBP12.04□□□□□ -0.48
SRP54-203ENST00000553544 VPS28Q9UK41 221 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 SNX10Q9Y5X0 201 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 BOD1L1Q8NFC6 3051 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 TCRBV5S1A1TA0A578 114 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 EME2A4GXA9 379 aaPredicted RBP12.03□□□□□ -0.48
SRP54-203ENST00000553544 A6NNZ2 444 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 TPP1O14773 563 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 SFTPCP11686 197 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 CHRNA3P32297 505 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 PTPN9P43378 593 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 NSFP46459 744 aaKnown RBP12.03□□□□□ -0.48
SRP54-203ENST00000553544 RPIAP49247 311 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 ZNF165P49910 485 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 TPM4P67936 248 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 KRT83P78385 493 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 CLN3Q13286 438 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 NR0B2Q15466 257 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 CCDC14Q49A88 953 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 RAB6CQ53S08 254 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 COLEC12Q5KU26 742 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 GCNT7Q6ZNI0 430 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 USP53Q70EK8 1073 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 IRF2BP2Q7Z5L9 587 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 CLEC14AQ86T13 490 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 SETD3Q86TU7 594 aaPredicted RBP12.03□□□□□ -0.48
SRP54-203ENST00000553544 FAM131BQ86XD5 332 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 SLC22A18ASQ8N1D0 253 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 SH2D3CQ8N5H7 860 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 ZNF548Q8NEK5 533 aaPredicted RBP12.03□□□□□ -0.48
SRP54-203ENST00000553544 WDR48Q8TAF3 677 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 RXFP2Q8WXD0 754 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 CENPIQ92674 756 aaPredicted RBP12.03□□□□□ -0.48
SRP54-203ENST00000553544 GLMNQ92990 594 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 ARRDC3Q96B67 414 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 FEM1CQ96JP0 617 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 BMFQ96LC9 184 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 PSMB7Q99436 277 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 IL12RB2Q99665 862 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 AGPAT1Q99943 283 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 ARHGAP9Q9BRR9 750 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 HDAC8Q9BY41 377 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 SLC17A9Q9BYT1 436 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 RAB6CQ9H0N0 254 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 CAAP1Q9H8G2 361 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 ADAM22Q9P0K1 906 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 MYO6Q9UM54 1294 aa12.03□□□□□ -0.48
SRP54-203ENST00000553544 PTPN13Q12923 2485 aa12.02□□□□□ -0.48
SRP54-203ENST00000553544 SPTY2D1-AS1A0A0U1RR47 76 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 A0A1B0GTH6 734 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 EFSO43281 561 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 AQP9O43315 295 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 PAK4O96013 591 aaPredicted RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 PRNPP04156 253 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 KRT3P12035 628 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 NME1P15531 152 aaKnown RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 FERP16591 822 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 SDC4P31431 198 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 RFC1P35251 1148 aaPredicted RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 ADRA1BP35368 520 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 RPS21P63220 83 aaKnown RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 ATP11AP98196 1134 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 NRG1Q02297 640 aaPredicted RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 FZD2Q14332 565 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 C15orf59Q2T9L4 293 aaPredicted RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 C6orf132Q5T0Z8 1188 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 GUSBP11Q6P575 273 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 LRRC31Q6UY01 552 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 ERN2Q76MJ5 926 aaKnown RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 MON1BQ7L1V2 547 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 STRADAQ7RTN6 431 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 PTAR1Q7Z6K3 402 aaPredicted RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 PHLDB2Q86SQ0 1253 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 ATP11CQ8NB49 1132 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 C3orf20Q8ND61 904 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 BTN2A2Q8WVV5 523 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 NAP1L5Q96NT1 182 aaPredicted RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 PPARGC1AQ9UBK2 798 aaKnown RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 ATXN7L1Q9ULK2 861 aaPredicted RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 ZFR2Q9UPR6 939 aaKnown RBP12.02□□□□□ -0.49
SRP54-203ENST00000553544 HS3ST2Q9Y278 367 aa12.02□□□□□ -0.49
SRP54-203ENST00000553544 UBR5O95071 2799 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms