RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 DCAF4L2Q8NA75 395 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 DENND6BQ8NEG7 585 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 OR6K2Q8NGY2 324 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 TSACCQ96A04 125 aaPredicted RBP13.13□□□□□ -0.31
VPS29-211ENST00000553128 SLC2A13Q96QE2 648 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 HEPHQ9BQS7 1158 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 THAP9Q9H5L6 903 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 MPP6Q9NZW5 540 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 GPR34Q9UPC5 381 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 DOLKQ9UPQ8 538 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 FCF1Q9Y324 198 aaKnown RBP13.13□□□□□ -0.31
VPS29-211ENST00000553128 RNF215Q9Y6U7 377 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 C16orf96A6NNT2 1141 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 TSPAN6O43657 245 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 ZMPSTE24O75844 475 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 CCL4P13236 92 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 ITIH2P19823 946 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 RECQLP46063 649 aaPredicted RBP13.12□□□□□ -0.31
VPS29-211ENST00000553128 FMO5P49326 533 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 CDK17Q00537 523 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 DNM1Q05193 864 aaKnown RBP13.12□□□□□ -0.31
VPS29-211ENST00000553128 OTUD1Q5VV17 481 aaPredicted RBP13.12□□□□□ -0.31
VPS29-211ENST00000553128 HID1Q8IV36 788 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 SLITRK4Q8IW52 837 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 LMO3Q8TAP4 145 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 ASB12Q8WXK4 309 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 KREMEN1Q96MU8 473 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 NT5C1BQ96P26 610 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 TRIM62Q9BVG3 475 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 SEMA6CQ9H3T2 930 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 ZDHHC6Q9H6R6 413 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 UPF2Q9HAU5 1272 aaKnown RBP13.12□□□□□ -0.31
VPS29-211ENST00000553128 LRRC4CQ9HCJ2 640 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 TMPRSS4Q9NRS4 437 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 RCOR1Q9UKL0 485 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 DAAM1Q9Y4D1 1078 aa13.12□□□□□ -0.31
VPS29-211ENST00000553128 SDK2Q58EX2 2172 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 CSMD1Q96PZ7 3565 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 NEMP1O14524 444 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 MMP20O60882 483 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 CD160O95971 181 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 LIFP15018 202 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 TFE3P19532 575 aaPredicted RBP13.11□□□□□ -0.31
VPS29-211ENST00000553128 SERPINH1P50454 418 aaKnown RBP13.11□□□□□ -0.31
VPS29-211ENST00000553128 HK3P52790 923 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 ARF5P84085 180 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 PDCLQ13371 301 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 ELOCQ15369 112 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 ALG11Q2TAA5 492 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 CARD16Q5EG05 197 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 RD3Q7Z3Z2 195 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 FSTL5Q8N475 847 aaPredicted RBP13.11□□□□□ -0.31
VPS29-211ENST00000553128 TP53I13Q8NBR0 393 aaPredicted RBP13.11□□□□□ -0.31
VPS29-211ENST00000553128 GPR156Q8NFN8 814 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 STK32AQ8WU08 396 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 NKD1Q969G9 470 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 MED15Q96RN5 788 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 SPON2Q9BUD6 331 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 EDEM3Q9BZQ6 932 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 TM6SF2Q9BZW4 377 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 HECAQ9UBI9 543 aaPredicted RBP13.11□□□□□ -0.31
VPS29-211ENST00000553128 ANAPC2Q9UJX6 822 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 ICE1Q9Y2F5 2266 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 ITPR2Q14571 2701 aa13.11□□□□□ -0.31
VPS29-211ENST00000553128 TRIM49BA6NDI0 452 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.1□□□□□ -0.31
VPS29-211ENST00000553128 SLC16A3O15427 465 aaKnown RBP13.1□□□□□ -0.31
VPS29-211ENST00000553128 F13A1P00488 732 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 CMA1P23946 247 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 NDUFA8P51970 172 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 YPEL5P62699 121 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 PKP1Q13835 747 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 IRF4Q15306 451 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 PHF19Q5T6S3 580 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 ANKRD40Q6AI12 368 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 LVRNQ6Q4G3 990 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 SPRED1Q7Z699 444 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 SETD3Q86TU7 594 aaPredicted RBP13.1□□□□□ -0.31
VPS29-211ENST00000553128 WDTC1Q8N5D0 677 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 PCDH20Q8N6Y1 951 aaKnown RBP13.1□□□□□ -0.31
VPS29-211ENST00000553128 CCDC47Q96A33 483 aaKnown RBP13.1□□□□□ -0.31
VPS29-211ENST00000553128 MIB2Q96AX9 1013 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 CMKLR1Q99788 373 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 EPAS1Q99814 870 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 SRRTQ9BXP5 876 aaKnown RBP13.1□□□□□ -0.31
VPS29-211ENST00000553128 RDH14Q9HBH5 336 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 METTL14Q9HCE5 456 aaKnown RBP13.1□□□□□ -0.31
VPS29-211ENST00000553128 PIGVQ9NUD9 493 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 ZNF212Q9UDV6 495 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 PLEKHB1Q9UF11 243 aaPredicted RBP13.1□□□□□ -0.31
VPS29-211ENST00000553128 USP25Q9UHP3 1055 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 TUBD1Q9UJT1 453 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 APPL1Q9UKG1 709 aa13.1□□□□□ -0.31
VPS29-211ENST00000553128 UNC13CQ8NB66 2214 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 DRGXA6NNA5 263 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 STMND1H3BQB6 276 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 M0QYT0 321 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 AREL1O15033 823 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 MTSS1O43312 755 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 LETM1O95202 739 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms