RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ALDH3B2P48448 385 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 SLC26A2P50443 739 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CSE1LP55060 971 aaKnown RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 TXNL4AP83876 142 aaKnown RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 TMEM62Q0P6H9 643 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CTBP1Q13363 440 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PTK2BQ14289 1009 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 USP10Q14694 798 aaKnown RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 HERC3Q15034 1050 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 DGKDQ16760 1214 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 ANO4Q32M45 955 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PITRM1Q5JRX3 1037 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 C9orf57Q5W0N0 161 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 LRRC8EQ6NSJ5 796 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CYP2R1Q6VVX0 501 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PAQR9Q6ZVX9 377 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 OTOP3Q7RTS5 596 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 OSTM1Q86WC4 334 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 NT5DC4Q86YG4 428 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CRYBG2Q8N1P7 616 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PELI3Q8N2H9 469 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CCNYL1Q8N7R7 359 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CNTD1Q8N815 330 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 TSPAN14Q8NG11 270 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CEP70Q8NHQ1 597 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 DPF3Q92784 378 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 EME1Q96AY2 570 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 HSPBAP1Q96EW2 488 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 MAELQ96JY0 434 aaKnown RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CDHR5Q9HBB8 845 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 GOLGA2P5Q9HBQ8 144 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 DUS2Q9NX74 493 aaKnown RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 ERAP1Q9NZ08 941 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 VTI1BQ9UEU0 232 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 FIS1Q9Y3D6 152 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 GMEB1Q9Y692 573 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 DNAJC25-GNG10A0A024R161 153 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 C3orf80F5H4A9 247 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SLCO1B7G3V0H7 640 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 H0YJX3 145 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 H3BNH8 94 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 AURKAO14965 403 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 TRIM24O15164 1050 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 DAB1O75553 588 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 DDHD2O94830 711 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF23P17027 643 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 AKAP5P24588 427 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 RPS12P25398 132 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 GNL1P36915 607 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 PRKAA2P54646 552 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 C1QTNF8P60827 252 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 YBX1P67809 324 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SOX4Q06945 474 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ARHGAP1Q07960 439 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 PPIDQ08752 370 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SEMA3BQ13214 749 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 LRP8Q14114 963 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 TRIM25Q14258 630 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 C6orf10Q5SRN2 563 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 NOL9Q5SY16 702 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 LCE2AQ5TA79 106 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 UNC93AQ86WB7 457 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SULF1Q8IWU6 871 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 OR9I1Q8NGQ6 314 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SPATA22Q8NHS9 363 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 RDH11Q8TC12 318 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 LPGAT1Q92604 370 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ASB9Q96DX5 294 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SNX27Q96L92 541 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CAMKK2Q96RR4 588 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 RANBP9Q96S59 729 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CIB1Q99828 191 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SLC39A3Q9BRY0 314 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 RHOJQ9H4E5 214 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CAAP1Q9H8G2 361 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 WDR6Q9NNW5 1121 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SFMBT1Q9UHJ3 866 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 TLK1Q9UKI8 766 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 GINS2Q9Y248 185 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 MTF2Q9Y483 593 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 AP4S1Q9Y587 144 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 MRPL42Q9Y6G3 142 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 RALGAPA2Q2PPJ7 1873 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 FNDC1Q4ZHG4 1894 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ANKRD12Q6UB98 2062 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ARHGEF37A1IGU5 675 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 MAGEB16A2A368 324 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 DLGAP1O14490 977 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SOCS2O14508 198 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 FOXD2O60548 495 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 PFDN1O60925 122 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 H6PDO95479 791 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 MT-CYBP00156 380 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 MT-CO1P00395 513 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 JCHAINP01591 159 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 GNAO1P09471 354 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CCDC166P0CW27 439 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 HSPA1AP0DMV8 641 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 HSPA1BP0DMV9 641 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 UGT1A6P19224 532 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms