RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 SNX33Q8WV41 574 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS29-210ENST00000552130 HDAC11Q96DB2 347 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 SGF29Q96ES7 293 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 FAM227BQ96M60 508 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 GAD1Q99259 594 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 PRRX2Q99811 253 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 SOX7Q9BT81 388 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 THUMPD2Q9BTF0 503 aaKnown RBP6.44□□□□□ -1.38
VPS29-210ENST00000552130 NUP85Q9BW27 656 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 PUS3Q9BZE2 481 aaKnown RBP6.44□□□□□ -1.38
VPS29-210ENST00000552130 RIBC2Q9H4K1 309 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 EHD1Q9H4M9 534 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 COQ10BQ9H8M1 238 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 SYNPO2LQ9H987 977 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 XPNPEP3Q9NQH7 507 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 TMEM140Q9NV12 185 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 NCDNQ9UBB6 729 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 XPR1Q9UBH6 696 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 SPASTQ9UBP0 616 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 FBXL17Q9UF56 701 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 AGAP1Q9UPQ3 857 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 TNFSF13BQ9Y275 285 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 DRG1Q9Y295 367 aaKnown RBP6.44□□□□□ -1.38
VPS29-210ENST00000552130 ATP11BQ9Y2G3 1177 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 SLC30A1Q9Y6M5 507 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 MROH5Q6ZUA9 1318 aa6.44□□□□□ -1.38
VPS29-210ENST00000552130 TEX13CA0A0J9YWL9 993 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 DENND3A2RUS2 1198 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 TEX22C9J3V5 150 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 CXCL11O14625 94 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 TO15178 435 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 NMT2O60551 498 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 DAB1O75553 588 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 RECQL4O94761 1208 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 PTBP3O95758 552 aaKnown RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 PDGFBP01127 241 aaPredicted RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 ZFYP08048 801 aaPredicted RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 CYC1P08574 325 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 CCDC192P0DO97 292 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 TACR2P21452 398 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 CDH3P22223 829 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 TCEA1P23193 301 aaKnown RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 RPL13P26373 211 aaKnown RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 THBS2P35442 1172 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 HSD17B2P37059 387 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 SLC6A11P48066 632 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 PMS2P54278 862 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 SNU13P55769 128 aaKnown RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 CEBPZQ03701 1054 aaKnown RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 DBPQ10586 325 aaPredicted RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 GPM6BQ13491 265 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 CSHL1Q14406 222 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 MFSD14BQ5SR56 506 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 RIPPLY2Q5TAB7 128 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 MANEALQ5VSG8 457 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 CRIP3Q6Q6R5 217 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 LRSAM1Q6UWE0 723 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 LRIG3Q6UXM1 1119 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 ARMC9Q7Z3E5 817 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 BMP8AQ7Z5Y6 402 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 PROSER1Q86XN7 944 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 ELMOD2Q8IZ81 293 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 NHLRC2Q8NBF2 726 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 LPCAT1Q8NF37 534 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 RAPGEF5Q92565 580 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 ZKSCAN4Q969J2 545 aaPredicted RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 MASTLQ96GX5 879 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 PAFAH2Q99487 392 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 GORASP1Q9BQQ3 440 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 NFKBIZQ9BYH8 718 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 ZNF341Q9BYN7 854 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 WDR26Q9H7D7 661 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 NRDE2Q9H7Z3 1164 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 FANCEQ9HB96 536 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 SYTL2Q9HCH5 934 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 CENPMQ9NSP4 180 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 RRP7BPQ9NSQ0 103 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 WSB2Q9NYS7 404 aaPredicted RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 RCOR1Q9UKL0 485 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 OSGIN2Q9Y236 505 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 RCE1Q9Y256 329 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 RUVBL1Q9Y265 456 aaKnown RBP6.43□□□□□ -1.38
VPS29-210ENST00000552130 NAALAD2Q9Y3Q0 740 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 PCDHB4Q9Y5E5 795 aa6.43□□□□□ -1.38
VPS29-210ENST00000552130 LOC100509620A0A075B734 347 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 XKRY2A2RUG3 117 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 HTR3EA5X5Y0 456 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 OOEPA6NGQ2 149 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 ADCY6O43306 1168 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 HEXIM1O94992 359 aaKnown RBP6.42□□□□□ -1.38
VPS29-210ENST00000552130 KLKB1P03952 638 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 C8BP07358 591 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 POLR2MP0CAP2 368 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 FPR1P21462 350 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 PTGS1P23219 599 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 SFPQP23246 707 aaKnown RBP eCLIP6.42□□□□□ -1.38
VPS29-210ENST00000552130 AHCYP23526 432 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 CD6P30203 668 aa6.42□□□□□ -1.38
VPS29-210ENST00000552130 CHRNA3P32297 505 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms