RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 CACUL1Q86Y37 369 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 LRRN4Q8WUT4 740 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 RLN3Q8WXF3 142 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 QKIQ96PU8 341 aaKnown RBP eCLIP13.94□□□□□ -0.18
PTCH1-213ENST00000546820 OSBPL9Q96SU4 736 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 NEUROG2Q9H2A3 272 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 SEMA4AQ9H3S1 761 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 SUV39H2Q9H5I1 410 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 SARDHQ9UL12 918 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 RAB23Q9ULC3 237 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 FZD4Q9ULV1 537 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 SNX12Q9UMY4 172 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 INVSQ9Y283 1065 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 ATP8A1Q9Y2Q0 1164 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 TTLL3Q9Y4R7 772 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 ARIH1Q9Y4X5 557 aaPredicted RBP13.94□□□□□ -0.18
PTCH1-213ENST00000546820 WASF2Q9Y6W5 498 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 SHROOM3Q8TF72 1996 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 IGHV1OR15-9A0A0B4J2B8 117 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 A0A1W2PP55 124 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 A0A1W2PQ67 120 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 LRRC72A6NJI9 287 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 LILRB5O75023 590 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 RHOBTB1O94844 696 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 UGT2B4P06133 528 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 CA4P22748 312 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 XPAP23025 273 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-213ENST00000546820 ITGB7P26010 798 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 RBL1P28749 1068 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 CASQ1P31415 396 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 STIP1P31948 543 aaKnown RBP13.93□□□□□ -0.18
PTCH1-213ENST00000546820 GKP32189 559 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 SIM2Q14190 667 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-213ENST00000546820 ELF2Q15723 593 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 CCNG2Q16589 344 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 SPDYCQ5MJ68 293 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 NCEH1Q6PIU2 408 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 B4GALNT4Q76KP1 1039 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 ERN2Q76MJ5 926 aaKnown RBP13.93□□□□□ -0.18
PTCH1-213ENST00000546820 PID1Q7Z2X4 250 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 ADAT2Q7Z6V5 191 aaKnown RBP13.93□□□□□ -0.18
PTCH1-213ENST00000546820 FAM124AQ86V42 546 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 C17orf53Q8N3J3 647 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-213ENST00000546820 PGBD5Q8N414 524 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 KLHL32Q96NJ5 620 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 AGAP3Q96P47 875 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 WDR24Q96S15 920 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 SEMA3CQ99985 751 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 HDAC8Q9BY41 377 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 KDM4CQ9H3R0 1056 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 NOD2Q9HC29 1040 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 WSB2Q9NYS7 404 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-213ENST00000546820 DKK3Q9UBP4 350 aa13.93□□□□□ -0.18
PTCH1-213ENST00000546820 TTC7AQ9ULT0 858 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-213ENST00000546820 TCRBV7S2A1N4TA0A589 114 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 CFAP69A5D8W1 941 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 C16orf96A6NNT2 1141 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 MUSKO15146 869 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 KCNN4O15554 427 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 SOCS5O75159 536 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 TUBB4AP04350 444 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 SERPINF2P08697 491 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 CR2P20023 1033 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 NFKBIAP25963 317 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 PTPN3P26045 913 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 RGRP47804 291 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 SUOXP51687 545 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 NEK3P51956 506 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 MAXP61244 160 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 ETF1P62495 437 aaKnown RBP13.92□□□□□ -0.18
PTCH1-213ENST00000546820 RPL6Q02878 288 aaKnown RBP13.92□□□□□ -0.18
PTCH1-213ENST00000546820 CNTN1Q12860 1018 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 ZBTB17Q13105 803 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 POM121L1PQ3SYA9 428 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 PAPD7Q5XG87 772 aaKnown RBP13.92□□□□□ -0.18
PTCH1-213ENST00000546820 ALG1LQ6GMV1 187 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 BRAT1Q6PJG6 821 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 LPCAT2Q7L5N7 544 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 TTC7BQ86TV6 843 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 CAMK1DQ8IU85 385 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 NDUFAF2Q8N183 169 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 RASGEF1CQ8N431 466 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 AADATQ8N5Z0 425 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 OR14C36Q8NHC7 312 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 FOXJ1Q92949 421 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 RAB7BQ96AH8 199 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 TOE1Q96GM8 510 aaKnown RBP13.92□□□□□ -0.18
PTCH1-213ENST00000546820 TEKT5Q96M29 485 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 FAM118BQ9BPY3 351 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 PCED1AQ9H1Q7 454 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 KLHL8Q9P2G9 620 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-213ENST00000546820 ZNF148Q9UQR1 794 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 SAR1BQ9Y6B6 198 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 R4GN57 208 aa13.92□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3DA0A087WVF3 549 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3IA0A087WXS9 549 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3EA0A087X179 549 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3KA0A087X1G2 549 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3FA6NER0 549 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3LB9A6J9 549 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms