RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CLSTN2Q9H4D0 955 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 MPP6Q9NZW5 540 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 KIAA1468Q9P260 1216 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 SNX10Q9Y5X0 201 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 ZFC3H1O60293 1989 aaKnown RBP13.05□□□□□ -0.32
USP28-212ENST00000544750 LRRK2Q5S007 2527 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 A0A1W2PQM1 296 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 ILVBLA1L0T0 632 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 D6RAR5 112 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 PSMA7O14818 248 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 ERBB2P04626 1255 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 CELA2BP08218 269 aaPredicted RBP13.04□□□□□ -0.32
USP28-212ENST00000544750 TSHRP16473 764 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 CCKBRP32239 447 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 IGFALSP35858 605 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 MARSP56192 900 aaKnown RBP13.04□□□□□ -0.32
USP28-212ENST00000544750 YPEL5P62699 121 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 SLC20A2Q08357 652 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 SGCGQ13326 291 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 BRMS1LQ5PSV4 323 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 FOXR2Q6PJQ5 311 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 C11orf57Q6ZUT1 292 aaPredicted RBP13.04□□□□□ -0.32
USP28-212ENST00000544750 RAB11FIP2Q7L804 512 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 PLPP6Q8IY26 295 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 RAB7BQ96AH8 199 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 PGAP3Q96FM1 320 aaPredicted RBP13.04□□□□□ -0.32
USP28-212ENST00000544750 C1orf74Q96LT6 269 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 INTS2Q9H0H0 1204 aaKnown RBP13.04□□□□□ -0.32
USP28-212ENST00000544750 TKTL2Q9H0I9 626 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 UBE2TQ9NPD8 197 aaPredicted RBP13.04□□□□□ -0.32
USP28-212ENST00000544750 TMPRSS4Q9NRS4 437 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 PCDHGC3Q9UN70 934 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 CTNND2Q9UQB3 1225 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 ITM2BQ9Y287 266 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 ACTL7AQ9Y615 435 aa13.04□□□□□ -0.32
USP28-212ENST00000544750 CXorf51AA0A1B0GTR3 108 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 C16orf96A6NNT2 1141 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 AREL1O15033 823 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 NVLO15381 856 aaKnown RBP13.03□□□□□ -0.32
USP28-212ENST00000544750 AFPP02771 609 aaKnown RBP13.03□□□□□ -0.32
USP28-212ENST00000544750 ANXA6P08133 673 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 FAM87AP0C7U9 286 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 LIPCP11150 499 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 HGFP14210 728 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 WT1P19544 449 aaPredicted RBP13.03□□□□□ -0.32
USP28-212ENST00000544750 PPP1R2P41236 205 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 SLC6A3Q01959 620 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 PTK2BQ14289 1009 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 PTPN20Q4JDL3 420 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 KLHL10Q6JEL2 608 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 RETSATQ6NUM9 610 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 ESRP1Q6NXG1 681 aaKnown RBP13.03□□□□□ -0.32
USP28-212ENST00000544750 ZNF783Q6ZMS7 281 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 MACC1Q6ZN28 852 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 ZNF574Q6ZN55 896 aaPredicted RBP13.03□□□□□ -0.32
USP28-212ENST00000544750 TFAP2DQ7Z6R9 452 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 ARL10Q8N8L6 244 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 NELFBQ8WX92 580 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 FOXP3Q9BZS1 431 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 WDCPQ9H6R7 721 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 EPB41L5Q9HCM4 733 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 RRN3Q9NYV6 651 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 FCF1Q9Y324 198 aaKnown RBP13.03□□□□□ -0.32
USP28-212ENST00000544750 TEX15Q9BXT5 2789 aa13.03□□□□□ -0.32
USP28-212ENST00000544750 TMX2-CTNND1H3BSU7 103 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 TOR1BO14657 336 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 OR1E1P30953 314 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 GKP32189 559 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 THOP1P52888 689 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 INHBCP55103 352 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 CCL7P80098 99 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 STIM1Q13586 685 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 TBR1Q16650 682 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 GJB7Q6PEY0 223 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 LVRNQ6Q4G3 990 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 ENOSF1Q7L5Y1 443 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 BNIPLQ7Z465 357 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 DTX1Q86Y01 620 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 KYQ8NBH2 561 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 TP53I13Q8NBR0 393 aaPredicted RBP13.02□□□□□ -0.33
USP28-212ENST00000544750 C1orf131Q8NDD1 294 aaKnown RBP13.02□□□□□ -0.33
USP28-212ENST00000544750 GPT2Q8TD30 523 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 HTR3CQ8WXA8 447 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 CCDC74AQ96AQ1 378 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 ISG20Q96AZ6 181 aaKnown RBP13.02□□□□□ -0.33
USP28-212ENST00000544750 GFM1Q96RP9 751 aaKnown RBP13.02□□□□□ -0.33
USP28-212ENST00000544750 ARHGAP9Q9BRR9 750 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 SLC13A1Q9BZW2 595 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 ZDHHC6Q9H6R6 413 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 MBNL1Q9NR56 388 aaKnown RBP13.02□□□□□ -0.33
USP28-212ENST00000544750 HECAQ9UBI9 543 aaPredicted RBP13.02□□□□□ -0.33
USP28-212ENST00000544750 PCDHGA4Q9Y5G9 962 aa13.02□□□□□ -0.33
USP28-212ENST00000544750 SFTPCP11686 197 aa13.01□□□□□ -0.33
USP28-212ENST00000544750 EIF4A3P38919 411 aaKnown RBP13.01□□□□□ -0.33
USP28-212ENST00000544750 STX17P56962 302 aa13.01□□□□□ -0.33
USP28-212ENST00000544750 GNA12Q03113 381 aa13.01□□□□□ -0.33
USP28-212ENST00000544750 ZFP36L1Q07352 338 aaKnown RBP13.01□□□□□ -0.33
USP28-212ENST00000544750 PAK1Q13153 545 aa13.01□□□□□ -0.33
USP28-212ENST00000544750 ZNF805Q5CZA5 627 aa13.01□□□□□ -0.33
USP28-212ENST00000544750 ACBD5Q5T8D3 534 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms