RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 FEM1AQ9BSK4 669 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 MTIF3Q9H2K0 278 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 ARNT2Q9HBZ2 717 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 IARS2Q9NSE4 1012 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 TREX1Q9NSU2 369 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 C20orf96Q9NUD7 363 aaPredicted RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 NKIRAS1Q9NYS0 192 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 SH3BP1Q9Y3L3 701 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 RWDD3Q9Y3V2 267 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 E2F8A0AVK6 867 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 A6NNZ2 444 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 TCP11X1B4DZS4 312 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 NDUFAB1O14561 156 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 ALDOAP04075 364 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 RB1P06400 928 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 PIRTP0C851 137 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 CEBPBP17676 345 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 TAC1P20366 129 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 GABRB3P28472 473 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 CD70P32970 193 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 ARCN1P48444 511 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 ERVK-21P61565 698 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 MLLT1Q03111 559 aaPredicted RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 FRG1Q14331 258 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 PTPRCAPQ14761 206 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 PTPRRQ15256 657 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 TUBB8Q3ZCM7 444 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 ASTLQ6HA08 431 aaPredicted RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 CGB2Q6NT52 195 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 LVRNQ6Q4G3 990 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 VN1R2Q8NFZ6 395 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 CHMP6Q96FZ7 201 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 APOPT1Q96IL0 206 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 GCNAQ96QF7 691 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 TGS1Q96RS0 853 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 TRIB3Q96RU7 358 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 DDX50Q9BQ39 737 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 MCMBPQ9BTE3 642 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 CINPQ9BW66 212 aaPredicted RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 POLR1EQ9GZS1 481 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 RETREG1Q9H6L5 497 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 SSU72Q9NP77 194 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 VPS45Q9NRW7 570 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 PCMTD2Q9NV79 361 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 ZFATQ9P243 1243 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 LHX3Q9UBR4 397 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 VPS51Q9UID3 782 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 ARHGAP26Q9UNA1 814 aa12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 SMG5Q9UPR3 1016 aaKnown RBP12.41□□□□□ -0.42
AP003559.1-201ENST00000540906 ANKRD36A6QL64 1941 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 TPP1O14773 563 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 BUD23O43709 281 aaKnown RBP12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 KRT37O76014 449 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 TMCC1O94876 653 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 ITGA2BP08514 1039 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 PTPN2P17706 415 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 ETV4P43268 484 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 RGS19P49795 217 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 SERPINH1P50454 418 aaKnown RBP12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 ARSDP51689 593 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 SLC18A1P54219 525 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 MPP1Q00013 466 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 LMAN2Q12907 356 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 CBX2Q14781 532 aaPredicted RBP12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 CNGA3Q16281 694 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 STRA8Q7Z7C7 330 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 CMTM8Q8IZV2 173 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 PPHLN1Q8NEY8 458 aaKnown RBP12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 ITFG1Q8TB96 612 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 DDI1Q8WTU0 396 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 DYDC1Q8WWB3 177 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 LMLNQ96KR4 655 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 PSKH2Q96QS6 385 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 PRKAG3Q9UGI9 489 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 SEPT3Q9UH03 358 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 CDH22Q9UJ99 828 aa12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 LSM7Q9UK45 103 aaKnown RBP12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 INTS6Q9UL03 887 aaKnown RBP12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 MTO1Q9Y2Z2 717 aaKnown RBP12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 FCF1Q9Y324 198 aaKnown RBP12.4□□□□□ -0.42
AP003559.1-201ENST00000540906 BPTFQ12830 3046 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CCDC195A0A1B0GUA6 201 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 MAGEB16A2A368 324 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 WDR91A4D1P6 747 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 INSIG1O15503 277 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 SMAD6O43541 496 aaKnown RBP12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 LPXNO60711 386 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 KRT38O76015 456 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 VAPBO95292 243 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 PRLP01236 227 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 PDHA1P08559 390 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 SCNN1BP51168 640 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 ZKSCAN8Q15776 578 aaPredicted RBP12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 PPM1JQ5JR12 505 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 FYB2Q5VWT5 728 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 RNF43Q68DV7 783 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 TIFABQ6ZNK6 161 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CMC1Q7Z7K0 106 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 MFN1Q8IWA4 741 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CCDC117Q8IWD4 279 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms