RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SP110Q9HB58 689 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 SEPT11Q9NVA2 429 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ZNF646O15015 1829 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 F8W810 466 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 MUSKO15146 869 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 SNNO75324 88 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 BCAS2O75934 225 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 RAD17O75943 681 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 PRKCBP05771 671 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CALB1P05937 261 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 COX4I1P13073 169 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 PCSK2P16519 638 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CKMT2P17540 419 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 EEF1B2P24534 225 aaKnown RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 ADSSP30520 456 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 SERPINB5P36952 375 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 HTR3AP46098 478 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 YAP1P46937 504 aaKnown RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 NFIAQ12857 509 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CEACAM7Q14002 265 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 DACT2Q5SW24 774 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CATSPEREQ5SY80 951 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 RNASEH2BQ5TBB1 312 aaKnown RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 STEAP3Q658P3 488 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 ZNF544Q6NX49 715 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 MFSD6Q6ZSS7 791 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 SH2D5Q6ZV89 423 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 SV2BQ7L1I2 683 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 COLGALT2Q8IYK4 626 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CERS5Q8N5B7 392 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CCDC185Q8N715 623 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 OR8K3Q8NH51 312 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 ZSCAN18Q8TBC5 510 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 GTF3C2Q8WUA4 911 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 TESCQ96BS2 214 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 MCRS1Q96EZ8 462 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 TBATAQ96M53 351 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CDRT15Q96T59 188 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 KATNAL1Q9BW62 490 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 FGFBP2Q9BYJ0 223 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 LHPPQ9H008 270 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 BLOC1S4Q9NUP1 217 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 GPRC5BQ9NZH0 403 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 IL37Q9NZH6 218 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 KLHL42Q9P2K6 505 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 COPG2Q9UBF2 871 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 DLGAP1O14490 977 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 SOCS2O14508 198 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 PHGDHO43175 533 aaKnown RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 ZNF780AO75290 641 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 LRRN2O75325 713 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 PTP4A3O75365 173 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 TRIM16O95361 564 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 TDP2O95551 362 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CLIC3O95833 236 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 PTTG1O95997 202 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 IFNA16P05015 189 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 MAGP20916 626 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 LRPAP1P30533 357 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 SSTR1P30872 391 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 ERVK-21P61565 698 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 TRIM25Q14258 630 aaKnown RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 SLC16A12Q6ZSM3 486 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 ARCQ7LC44 396 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CTAGE3PQ8IX95 158 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 C12orf56Q8IXR9 622 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 ZNF384Q8TF68 577 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 FKBP10Q96AY3 582 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 NSUN4Q96CB9 384 aaKnown RBP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 RIPOR3Q96MK2 946 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 ZNF778Q96MU6 729 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 RTKNQ9BST9 563 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.56□□□□□ -0.88
CLIP1-214ENST00000540539 ABCG4Q9H172 646 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 MIR1-1HGQ9H1L0 117 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 BRD7Q9NPI1 651 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 PRDM8Q9NQV8 689 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 NPAP1Q9NZP6 1156 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 SIRPGQ9P1W8 387 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 PCDHA6Q9UN73 950 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 SNCAIPQ9Y6H5 919 aa9.56□□□□□ -0.88
CLIP1-214ENST00000540539 TCRBV5S4A2TA0A5A2 114 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 F5H6K3 240 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 CPNE3O75131 537 aaKnown RBP9.55□□□□□ -0.88
CLIP1-214ENST00000540539 HMGN1P05114 100 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 TMEM191BP0C7N4 346 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 CYP7A1P22680 504 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 KLRC2P26717 231 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 SOX5P35711 763 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 DDOSTP39656 456 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 NUDT2P50583 147 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 PPP5CP53041 499 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 GSTO1P78417 241 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 LAMC2Q13753 1193 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 GRTP1Q5TC63 336 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 RINT1Q6NUQ1 792 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 CRTC3Q6UUV7 619 aa9.55□□□□□ -0.88
CLIP1-214ENST00000540539 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.55□□□□□ -0.88
CLIP1-214ENST00000540539 ZBTB49Q6ZSB9 765 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms