RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TSNAXIP1Q2TAA8 658 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 PITRM1Q5JRX3 1037 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 TSTD2Q5T7W7 516 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 LRRC8EQ6NSJ5 796 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 NEPROQ6NW34 567 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 GLB1LQ6UWU2 654 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 CCNJLQ8IV13 435 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 PPHLN1Q8NEY8 458 aaKnown RBP17.09■□□□□ 0.33
USP28-208ENST00000540438 LINC01599Q8WXQ3 324 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 TBATAQ96M53 351 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 ALG9Q9H6U8 611 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 SP110Q9HB58 689 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 OXSMQ9NWU1 459 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 MKS1Q9NXB0 559 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 LRRC42Q9Y546 428 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 PCDHB12Q9Y5F1 795 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 TMEM88BA6NKF7 163 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 MUSKO15146 869 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 SP100P23497 879 aaPredicted RBP17.08■□□□□ 0.33
USP28-208ENST00000540438 RPL9P32969 192 aaKnown RBP17.08■□□□□ 0.33
USP28-208ENST00000540438 TBX4P57082 545 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 FKBP1BP68106 108 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 PCID2Q5JVF3 399 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 GPR158Q5T848 1215 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 FBXL22Q6P050 247 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 OR9I1Q8NGQ6 314 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 OR13C4Q8NGS5 318 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 CDRT15Q96T59 188 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 C1QTNF1Q9BXJ1 281 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 IL1RL2Q9HB29 575 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 FBRSL1Q9HCM7 1045 aaKnown RBP17.08■□□□□ 0.33
USP28-208ENST00000540438 TBC1D13Q9NVG8 400 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 ARHGEF38Q9NXL2 777 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 ADAMTS6Q9UKP5 1117 aa17.08■□□□□ 0.33
USP28-208ENST00000540438 NCF1BA6NI72 391 aaPredicted RBP17.08■□□□□ 0.32
USP28-208ENST00000540438 NCF1CA8MVU1 366 aaPredicted RBP17.08■□□□□ 0.32
USP28-208ENST00000540438 MATN3O15232 486 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 NCAM2O15394 837 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 SEPT4O43236 478 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 NCF1P14598 390 aaPredicted RBP17.08■□□□□ 0.32
USP28-208ENST00000540438 ATP6V1C1P21283 382 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 PEX2P28328 305 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 NPY2RP49146 381 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 VARS2Q5ST30 1063 aaKnown RBP17.08■□□□□ 0.32
USP28-208ENST00000540438 CAPRIN2Q6IMN6 1127 aaKnown RBP17.08■□□□□ 0.32
USP28-208ENST00000540438 GK5Q6ZS86 529 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 LSMEM2Q8N112 164 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 FBXO32Q969P5 355 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 PKMYT1Q99640 499 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 SLC39A3Q9BRY0 314 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 CDH22Q9UJ99 828 aa17.08■□□□□ 0.32
USP28-208ENST00000540438 MAP3K7O43318 606 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 TIMM44O43615 452 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 SIX3O95343 332 aaPredicted RBP17.07■□□□□ 0.32
USP28-208ENST00000540438 GRK2P25098 689 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 ARCN1P48444 511 aaKnown RBP17.07■□□□□ 0.32
USP28-208ENST00000540438 C6orf163Q5TEZ5 329 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 SDCCAG8Q86SQ7 713 aaPredicted RBP17.07■□□□□ 0.32
USP28-208ENST00000540438 TUBB6Q9BUF5 446 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 RHOJQ9H4E5 214 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 EYSQ5T1H1 3165 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 RALGAPA2Q2PPJ7 1873 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 HARS2P49590 506 aaKnown RBP17.07■□□□□ 0.32
USP28-208ENST00000540438 CCDC153Q494R4 210 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 MS4A13Q5J8X5 152 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 SEL1L3Q68CR1 1132 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 EPGNQ6UW88 154 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 CLEC14AQ86T13 490 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 PGBD5Q8N414 524 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 OR7D4Q8NG98 312 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 SOCS4Q8WXH5 440 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 GPR22Q99680 433 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 FAM96AQ9H5X1 160 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 GKN1Q9NS71 199 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 NDE1Q9NXR1 346 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 SZT2Q5T011 3432 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 MYOCOSA0A1B0GUC4 107 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 ADAM12O43184 909 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 GRID2O43424 1007 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 CKBP12277 381 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 OR1E1P30953 314 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 RAB10P61026 200 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 MRPS22P82650 360 aaKnown RBP17.07■□□□□ 0.32
USP28-208ENST00000540438 GRIK3Q13003 919 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 CCNIQ14094 377 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 GEN1Q17RS7 908 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 GRAMD1BQ3KR37 738 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 C16orf59Q7L2K0 433 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 ARHGAP24Q8N264 748 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 PPFIBP2Q8ND30 876 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 KIFC1Q9BW19 673 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 EBF3Q9H4W6 596 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 GPAMQ9HCL2 828 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 STX18Q9P2W9 335 aaKnown RBP17.07■□□□□ 0.32
USP28-208ENST00000540438 POMPQ9Y244 141 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 TCAF1Q9Y4C2 921 aa17.07■□□□□ 0.32
USP28-208ENST00000540438 KCNU1A8MYU2 1149 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 TRPA1O75762 1119 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 TOMM70O94826 608 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 AOC1P19801 751 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms