RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 ZNF560Q96MR9 790 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 SNX18Q96RF0 628 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 TINF2Q9BSI4 451 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 DHX33Q9H6R0 707 aaKnown RBP9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 TRIM39Q9HCM9 518 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 KLHL11Q9NVR0 708 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 FLRT1Q9NZU1 646 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 MTRRQ9UBK8 725 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 H3BUI4 141 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 DLGAP1O14490 977 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 TOR1BO14657 336 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 MTSS1O43312 755 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 MAN1A2O60476 641 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 DEAF1O75398 565 aaPredicted RBP9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 KCNK2O95069 426 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 GSTM1P09488 218 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 TGFB3P10600 412 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 ENO3P13929 434 aaPredicted RBP9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 CLCNKBP51801 687 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 ZNF132P52740 706 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 NME5P56597 212 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 PRKCEQ02156 737 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 VAC14Q08AM6 782 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 CCL14Q16627 93 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 PRAMEF19Q5SWL8 479 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 FAM205BPQ63HN1 556 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 MBLAC2Q68D91 279 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 ACAD10Q6JQN1 1059 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 CYP20A1Q6UW02 462 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 ZNF467Q7Z7K2 595 aaPredicted RBP9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 PCGF5Q86SE9 256 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 ADAMTSL2Q86TH1 951 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 SLC26A11Q86WA9 606 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 RHOT1Q8IXI2 618 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 COLGALT2Q8IYK4 626 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 KATNAL2Q8IYT4 538 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 NAT8LQ8N9F0 302 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 CMASQ8NFW8 434 aaPredicted RBP9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 COPS5Q92905 334 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 TARS2Q9BW92 718 aaKnown RBP9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 JPH1Q9HDC5 661 aaPredicted RBP9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 SLC9A2Q9UBY0 812 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 POLHQ9Y253 713 aa9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 DRG1Q9Y295 367 aaKnown RBP9.58□□□□□ -0.88
CTNNA1-243ENST00000540387 TCRBV7S3A2A0A539 114 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 EVPLLA8MZ36 301 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 PI4K2BG5E9Z4 385 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 PSTPIP1O43586 416 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 CCNKO75909 580 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 KRT37O76014 449 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 CLIC3O95833 236 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TOP3BO95985 862 aaKnown RBP9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 HOXC6P09630 235 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TSHRP16473 764 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 ELK3P41970 407 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 CYP2J2P51589 502 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 MRPS15P82914 257 aaKnown RBP9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 SP3Q02447 781 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TRIM32Q13049 653 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 AQP6Q13520 282 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 BMPR2Q13873 1038 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 SELPLGQ14242 412 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 PXDC1Q5TGL8 231 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TAPT1Q6NXT6 567 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 CTAGE3PQ8IX95 158 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 PGAM4Q8N0Y7 254 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 PPM1NQ8N819 430 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 SIMC1Q8NDZ2 872 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TTC9Q92623 222 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TRIM63Q969Q1 353 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 CITED4Q96RK1 184 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TMEM246Q9BRR3 403 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 BEGAINQ9BUH8 593 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 ADI1Q9BV57 179 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 MKRN2Q9H000 416 aaKnown RBP9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 KATNBL1Q9H079 304 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 MUC3BQ9H195 1237 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 FAM96AQ9H5X1 160 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 SP140LQ9H930 580 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 ATP13A2Q9NQ11 1180 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 ADPRHL2Q9NX46 363 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TANC1Q9C0D5 1861 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 LINC00854A0A1B0GVQ3 168 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 LRRIQ4A6NIV6 560 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 WDR64B1ANS9 1081 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 KBTBD13C9JR72 458 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 B3GALNT1O75752 331 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TMEM63AO94886 807 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 CCDC159P0C7I6 412 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TXNP10599 105 aaKnown RBP9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 FGF3P11487 239 aaPredicted RBP9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 BMP4P12644 408 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 PIK3R1P27986 724 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 WEE1P30291 646 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 YAP1P46937 504 aaKnown RBP9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 ACTR2P61160 394 aa9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 RPL10AP62906 217 aaKnown RBP9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 TAGLNQ01995 201 aaKnown RBP9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 NFX1Q12986 1120 aaKnown RBP9.57□□□□□ -0.88
CTNNA1-243ENST00000540387 SNX17Q15036 470 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms